View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_high_10 (Length: 366)
Name: NF15666_high_10
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 40993275 - 40992962
Alignment:
| Q |
1 |
gaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaataggtttgagtttgcagct |
100 |
Q |
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| T |
40993275 |
gaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaataggtttgagtttgcagct |
40993176 |
T |
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| Q |
101 |
aggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagttccatt-------gtgatattgctactttag |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40993175 |
aggatagttgatgcaaacaaggaagtcgttagaattaaaaggataaagcatggtttgggaatgtgaagttccattgtgaattgtgatattgctactttag |
40993076 |
T |
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| Q |
194 |
agttatgctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtactagtttatagaaaggggctaaaagtaatatcagcagtgacac |
293 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40993075 |
agttaggctagatattgtacaaggaaatgatgcactatatgcgcttaaatactagtactagtttatagaaaggggctaaaagtaatatcagcagtgacac |
40992976 |
T |
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| Q |
294 |
aataatttggaaga |
307 |
Q |
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|||||||||||||| |
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| T |
40992975 |
aataatttggaaga |
40992962 |
T |
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