View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_high_13 (Length: 336)
Name: NF15666_high_13
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 39792152 - 39791827
Alignment:
| Q |
1 |
tttttgacagttttatacaaatcaatgttgtcaaacttcaagaggaggccaactgagcattaaatcactttaaggaaactttgatctcatactgtataac |
100 |
Q |
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| T |
39792152 |
ttttttacagtattatacaaatcaatgttgtcaaacttcaagaggaggccaactgagcattaaatcactttaaggaaactttgatctcatactgtataac |
39792053 |
T |
|
| Q |
101 |
taaagctcaatagtgaatacttaacaaggagatagattttcccattgtgtaccgaaagctttgctccggacacggcccaatatcctggagtttctcctgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39792052 |
taaagctcaatagtgaatacttaacaaggagatagattttcccattgtgtaccgaaagctttgctccggacacggcccaatatcctggagtttctcctgg |
39791953 |
T |
|
| Q |
201 |
tcctctgaccatttccattttgtccacatacctttgaagcttaggtgcatttatcggtgcagggaggttgatagcatgcacaacagaactaatgaacacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39791952 |
tcctctgaccatttccattttgtccacatacctttgaagcttaggtgcatttatcggtgcagggaggttgatagcatgcacaacagaactaatgaacacc |
39791853 |
T |
|
| Q |
301 |
tcaccaggctttggatgatccctatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
39791852 |
tcaccaggctttggatgatccctatg |
39791827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 324
Target Start/End: Complemental strand, 39786512 - 39786241
Alignment:
| Q |
52 |
actgagcattaaatcactttaaggaaactttgatctcatactgtataactaaagctcaatagtgaatacttaacaaggagatagattttcccattgtgta |
151 |
Q |
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| T |
39786512 |
actgagcattaaagcacttttaggaagctttgatctcagactgtataac-aaagcgcaatagtgaatacttaacaaggagatatattttcacattgtgta |
39786414 |
T |
|
| Q |
152 |
ccgaaagctttgctccggacacggcccaatatcctggagtttctcctggtcctctgaccatttccattttgtccacatacctttgaagcttaggtgcatt |
251 |
Q |
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| T |
39786413 |
cagaaagctttgctccggacacaacccaatatcctggagcgttttctggtcctctgatcatttctgttggatccacatacctttgaagcttaggtgtatt |
39786314 |
T |
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| Q |
252 |
tatcggtgcagggaggttgatagcatgcacaacagaactaatgaacacctcaccaggctttggatgatcccta |
324 |
Q |
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||| ||| | |||||| ||| || ||| |||||| |||| ||| || |||||||||||||||| |||| |
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| T |
39786313 |
tattggtacggggaggccagtaggatatacagcagaaccaatggtcacgtctccaggctttggatgattccta |
39786241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 39796441 - 39796296
Alignment:
| Q |
102 |
aaagctcaatagtgaatacttaacaaggagatagattttcccattgtgtaccgaaagctttgctccggacacggcccaatatcctggagtttctcctggt |
201 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| | | |||| |
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| T |
39796441 |
aaagctcaatagtgaatacttaacaaggagatatatttttccattgtgtacataaagctttgctccggacacagcccaatatcctggagtgttttttggt |
39796342 |
T |
|
| Q |
202 |
cctctgaccatttccattttgtccacatacctttgaagcttaggtg |
247 |
Q |
| |
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|| |||| | |||||||| ||||||||||||||||||||||||||| |
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| T |
39796341 |
cccctgatcctttccattctgtccacatacctttgaagcttaggtg |
39796296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 39777976 - 39777831
Alignment:
| Q |
102 |
aaagctcaatagtgaatacttaacaaggagatagattttcccattgtgtaccgaaagctttgctccggacacggcccaatatcctggagtttctcctggt |
201 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||| ||| | |||||| |||| || ||||| |||| ||||||||||| ||| | || |
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| T |
39777976 |
aaagttcaatagtgaatacttaacaaggagatatattttcccattctgtgcagaaagccttgcaccagacacaacccagtatcctggagtgtcttcgggc |
39777877 |
T |
|
| Q |
202 |
cctctgaccatttccattttgtccacatacctttgaagcttaggtg |
247 |
Q |
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||||| | ||||||| || ||||||||||| ||||||||||||||| |
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| T |
39777876 |
cctctcatcatttccgttatgtccacatacttttgaagcttaggtg |
39777831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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