View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_high_14 (Length: 326)
Name: NF15666_high_14
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 5501633 - 5501337
Alignment:
| Q |
18 |
aaatgactttttagtctttgaaatatatttcagttttcgtttctattaaagatttttatcagtttgtattcctaaactagaggaaagataattttttatc |
117 |
Q |
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| T |
5501633 |
aaatgactttttcgtctttgaaatatatttcagttttcgtttctattaaagatttttatcagtttgtattcctaaaatacaggaaagattgtcttttatc |
5501534 |
T |
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| Q |
118 |
ctcgttataatttcggttttagactttgataataattgttcatattggagtattagtccatagagtagagactatacatggactatgtccaatatcaaca |
217 |
Q |
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| T |
5501533 |
ctcgttat---tttggttttagactttgataataattgttcatattggagtattagtccatagagtagatactatacatggactatgtccaatatcaaca |
5501437 |
T |
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| Q |
218 |
aatattacaagcattgtgttctatgttttaggcattattactgataagaattttaattagggacaaattacggtacttatttaaaccttcagttctgtgc |
317 |
Q |
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| T |
5501436 |
aatattacaagcattgtgttctatgttttaggtattattactgataagaattttaattagggacatattacggtacttatttaaaccttcagttctgtgc |
5501337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 44 - 317
Target Start/End: Complemental strand, 5488804 - 5488522
Alignment:
| Q |
44 |
atttcagttttcgtttctattaaagatttttatcagtttgtattcctaaactagaggaaagataattttttatcctcgttataatttcggttttagactt |
143 |
Q |
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| T |
5488804 |
atttcagttttcgtttctattaaagatttgtatcagtttgtattcctaaaatacaggaaagattgttttttatcctcattat---tttggttttagtctt |
5488708 |
T |
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| Q |
144 |
tgataataattgttcatattggagtattagtccatagagtagagactatacatggactatgtccaatatcaacaaatattacaagcattgtgttctatgt |
243 |
Q |
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| T |
5488707 |
tgataataattgttcatattggagtattagtccatagagtggacactatacatagaccatgtccaatatcaacaaatattacaagtattgtgttctatgt |
5488608 |
T |
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| Q |
244 |
tttaggcattattactgataagaattttaattagggac------------aaattacggtacttatttaaaccttcagttctgtgc |
317 |
Q |
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| T |
5488607 |
tttaggcattattaccgataagaattttatttagggactaattactaaaaaaattacggtacttatttaaaccttcagttctgtgc |
5488522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 281
Target Start/End: Complemental strand, 5483327 - 5483178
Alignment:
| Q |
132 |
ggttttagactttgataataattgttcatattggagtattagtccatagagtagagactatacatggactatgtccaatatcaacaaatattacaagcat |
231 |
Q |
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| T |
5483327 |
ggttttagtctttgataataatttttcatattggagtattagtccatagaatatagactatacatagactatgtccaatatcaacaaatattccaagcaa |
5483228 |
T |
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| Q |
232 |
tgtgttctatgttttaggcattattactgataagaattttaattagggac |
281 |
Q |
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| T |
5483227 |
tgtgttctatgctttaggcattattaccgataagaattttatttagggac |
5483178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 5524468 - 5524344
Alignment:
| Q |
44 |
atttcagttttcgtttctattaaagatttttatcagtttgtattcctaaactagaggaaagataattttttatcctcgttataatttcggttttagactt |
143 |
Q |
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| T |
5524468 |
atttcggttttcatttctataaaagatttttatcagtttgaattcctaaaatacaggaaagattgttttttgtcctc---attatttttgttttaatctt |
5524372 |
T |
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| Q |
144 |
tgataataattgttcatattggagtatt |
171 |
Q |
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| T |
5524371 |
tgataataattgttcatattggagtatt |
5524344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 5453390 - 5453317
Alignment:
| Q |
198 |
gactatgtccaatatcaacaaatattacaagcattgtgttctatgttttaggcattattactgataagaatttt |
271 |
Q |
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| T |
5453390 |
gactaagttcaatatggacaaatattacaaggattgttttctatgttttaggcattattgctgataagaatttt |
5453317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 5444842 - 5444800
Alignment:
| Q |
225 |
caagcattgtgttctatgttttaggcattattactgataagaa |
267 |
Q |
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| T |
5444842 |
caaggattgttttctatgttttaggcattattactgataagaa |
5444800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 271
Target Start/End: Original strand, 5855661 - 5855746
Alignment:
| Q |
186 |
agactatacatggactatgtccaatatcaacaaatattacaagcattgtgttctatgttttaggcattattactgataagaatttt |
271 |
Q |
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|||||||||||||| | | | |||| | |||||||||||||| ||||| |||||||||| | | |||| |||| ||||||||||| |
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| T |
5855661 |
agactatacatggattgtcttcaatgtggacaaatattacaaggattgttttctatgtttcaagtattaatactaataagaatttt |
5855746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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