View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_high_19 (Length: 263)
Name: NF15666_high_19
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 2489478 - 2489703
Alignment:
| Q |
19 |
ctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaaga |
118 |
Q |
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| T |
2489478 |
ctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaaga |
2489577 |
T |
|
| Q |
119 |
ttcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489578 |
ttcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacct |
2489677 |
T |
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| Q |
219 |
ggaacaggaaaaacaatgctggcaaa |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2489678 |
ggaacaggaaaaacaatgctggcaaa |
2489703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 41591508 - 41591286
Alignment:
| Q |
19 |
ctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaaga |
118 |
Q |
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|||||||||| ||||||||||||||||| |||||||| || ||||||||||| |||| || |||||||| || |||||||||||||| || || ||||| |
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| T |
41591508 |
ctgataatgaatttgagaagcgaataaggcctgaagttataccagcaaatgagattgatgtcacattctctgatattggtgccttagaagaaacaaaaga |
41591409 |
T |
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| Q |
119 |
ttcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacct |
218 |
Q |
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| T |
41591408 |
atcacttcaagaactagtaatgcttcctcttcgaaggccagaccttttcactggaggacttctaaaaccatgtcggggaatattgctatttgggcctcct |
41591309 |
T |
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| Q |
219 |
ggaacaggaaaaacaatgctggc |
241 |
Q |
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||||| || |||||||||||||| |
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| T |
41591308 |
ggaactgggaaaacaatgctggc |
41591286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 244
Target Start/End: Complemental strand, 11094893 - 11094682
Alignment:
| Q |
33 |
gagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagattcacttcaagaac |
132 |
Q |
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||||||||||| ||||||||||| ||||| |||||||| || || || |||||| | || || ||||| ||||| |||| ||||| || |||||||| | |
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| T |
11094893 |
gagaagcgaattagacctgaagttatccctgcaaatgagataggtgttacattcgcagatatcggtgcattagatgagataaaagaatcgcttcaagagc |
11094794 |
T |
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| Q |
133 |
tagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaac |
232 |
Q |
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||||||||||||||||| |||| ||||||||||| |||| || ||||||||||| |||||||| ||||| || || || |||||||| || |||||||| |
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| T |
11094793 |
tagtaatgcttccccttagaagaccagaccttttcaaaggtggacttctaaagccatgtagaggtatattacttttcggtccacctggtaccggaaaaac |
11094694 |
T |
|
| Q |
233 |
aatgctggcaaa |
244 |
Q |
| |
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|||||| ||||| |
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| T |
11094693 |
aatgctagcaaa |
11094682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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