View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_high_5 (Length: 467)
Name: NF15666_high_5
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 282 - 452
Target Start/End: Original strand, 6749154 - 6749324
Alignment:
| Q |
282 |
tgaaacttgtgtatatatgttgaagagtttgttcatacaacaatccatgcaacctaaaaggatcttacaaccgttcatcatgttctcattttttgaaata |
381 |
Q |
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| T |
6749154 |
tgaaacttgtgtatatatgttgaagagtttgttcatacaacaatccatgcaacctaaaaggatcttacaaccgttcatcatgttctcattttttgaaata |
6749253 |
T |
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| Q |
382 |
tataatcactcactcatttcctcttaaatcatcagctttattataagttggcgtaactaaaccgagaataa |
452 |
Q |
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| T |
6749254 |
tataatcactcactcatttcctcttaaatcatcagctttattataagtcggcgtaactaaaccgagaataa |
6749324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 6748891 - 6748971
Alignment:
| Q |
19 |
gatatgctaggtgattttgcagttaattattgttgtg-agacttttctattgaggtcacttaacattctttggaggacctc |
98 |
Q |
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| T |
6748891 |
gatattctaggtgattttgcagttaattattgttgtgtagacttttctattgaggtcacttaacattctttagaggacctc |
6748971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 6749054 - 6749091
Alignment:
| Q |
180 |
aaaaatacaagtctcttgtctcattccccaaacatgcacg |
219 |
Q |
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| T |
6749054 |
aaaaatacaagtct--tgtctcattccccaaacatgcacg |
6749091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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