View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15666_high_7 (Length: 423)
Name: NF15666_high_7
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 8974025 - 8974428
Alignment:
| Q |
1 |
tggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974025 |
tggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaacta |
8974124 |
T |
|
| Q |
101 |
atcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974125 |
atcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactctttttgatcaagtttctaatttgcttacagtaatagttgtaggagctgtta |
8974224 |
T |
|
| Q |
201 |
ttatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattatcaaagatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974225 |
ttatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatacatcattattaaccaaaccaatggagaaattatcaaagatta |
8974324 |
T |
|
| Q |
301 |
catacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974325 |
catacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttca |
8974424 |
T |
|
| Q |
401 |
agag |
404 |
Q |
| |
|
|||| |
|
|
| T |
8974425 |
agag |
8974428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 8962629 - 8963032
Alignment:
| Q |
1 |
tggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaacta |
100 |
Q |
| |
|
||||||||||||| | ||||| |||| ||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| ||||| |
|
|
| T |
8962629 |
tggagtctcactcaccggcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaattttacagaacta |
8962728 |
T |
|
| Q |
101 |
atcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgtta |
200 |
Q |
| |
|
|||| |||||| || ||||||| || |||||||||||||||| || |||| | ||||| ||| |||| || ||| || | ||||||||||||| || |
|
|
| T |
8962729 |
atcagagtgaagagcgagattgtggtttgtgaagacaagaatgaaagtctttctaatcaaatttataatgtggttaaagcagaagttgtaggagctattt |
8962828 |
T |
|
| Q |
201 |
ttatatcaaacacttcacaaaataatctatcacaacttttagggttccagcttccatatatcattattaaccaaaccaatggagaaattatcaaagatta |
300 |
Q |
| |
|
||||||||||||| ||||| || |||||||| || ||| ||| || |||||||| |||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
8962829 |
ttatatcaaacacaacacaagatgatctatcagaagacttacggtacctgcttccatccatcattattaaccagaaaaatggagaaatggtcaaagatta |
8962928 |
T |
|
| Q |
301 |
catacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttca |
400 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
8962929 |
catacatagtaactttaactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttct |
8963028 |
T |
|
| Q |
401 |
agag |
404 |
Q |
| |
|
|||| |
|
|
| T |
8963029 |
agag |
8963032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 8946434 - 8946351
Alignment:
| Q |
28 |
ttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||| ||| | |||||||||||||||||| ||| |||||| ||||| || ||||||||||||| |
|
|
| T |
8946434 |
ttatctaggaaatttctctgctagcaatttgccaattgttttcatgggtttgtgcgacaatgttacagaattaatcaaagtgaa |
8946351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 21687609 - 21687400
Alignment:
| Q |
1 |
tggagtctcactctctggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaacta |
100 |
Q |
| |
|
||||||||||||| |||| || ||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| ||| | || || |
|
|
| T |
21687609 |
tggagtctcactcactggtttgtctttctatctaggaaacttctctgctaacaattttccaattgtttttatgggtatgtgtgacaatgttaaagaatta |
21687510 |
T |
|
| Q |
101 |
atcaaagtgaaaagtaagattgttgtctgtgaagacaagaatggaactcttcttgatcaagtttctaatttgcttacagtaatagttgtaggagctgtta |
200 |
Q |
| |
|
| || |||||| || |||||||| || ||||||| ||| |||| |||||||| ||| ||| | | |||| || || || || |||||| |||| |||| |
|
|
| T |
21687509 |
aacacagtgaagagaaagattgtggtttgtgaaggcaataatgaaactcttcatgaacaaatgtttaatgtgtataaagcaaaagttgttggaggtgttt |
21687410 |
T |
|
| Q |
201 |
ttatatcaaa |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
21687409 |
ttatatcaaa |
21687400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 402
Target Start/End: Complemental strand, 21687306 - 21687214
Alignment:
| Q |
310 |
taactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatttttatagttcaag |
402 |
Q |
| |
|
|||||||||| | |||||||||| ||| || |||||||||| |||| |||| |||| |||| || | ||||| |||||||||||||| ||||| |
|
|
| T |
21687306 |
taactctaacgctagttcaatagcaaacatgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaag |
21687214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 34963123 - 34963079
Alignment:
| Q |
104 |
aaagtgaaaagtaagattgttgtctgtgaagacaagaatggaact |
148 |
Q |
| |
|
||||||||||| |||||| | || ||||||||||||||||||||| |
|
|
| T |
34963123 |
aaagtgaaaagcaagattatagtgtgtgaagacaagaatggaact |
34963079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University