View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15666_low_10 (Length: 410)

Name: NF15666_low_10
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15666_low_10
NF15666_low_10
[»] chr7 (2 HSPs)
chr7 (18-398)||(48267924-48268307)
chr7 (24-68)||(35120155-35120199)
[»] chr3 (1 HSPs)
chr3 (25-81)||(34430458-34430513)
[»] chr2 (1 HSPs)
chr2 (24-68)||(34400257-34400301)
[»] chr4 (4 HSPs)
chr4 (25-68)||(31361348-31361391)
chr4 (24-68)||(11697400-11697444)
chr4 (40-68)||(52810196-52810224)
chr4 (25-81)||(53741213-53741268)
[»] chr5 (3 HSPs)
chr5 (25-68)||(11443849-11443892)
chr5 (18-68)||(799854-799904)
chr5 (25-81)||(513925-513980)
[»] chr1 (1 HSPs)
chr1 (25-66)||(37492681-37492722)
[»] chr6 (1 HSPs)
chr6 (25-81)||(8416289-8416344)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 48267924 - 48268307
Alignment:
Q  18 catacataaaatttgttaaacttttaaatttattttaatataaattaatatgaaatatatgacacaacgtatatactcaactaaactttattagtacatt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  48267924 catacataaaatttgttgaacttttaaatttattttaatataaattaatatgaaatatatgacacaacgtacatactcaattaaactttattggtacatt 48268023  T
Q  118 ctgctcatcattannnnnnnnaccatcaattgctcaactaaactttatggacacattacctatttatagcatccaatgcttagtgcctatataaatggtt 217  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48268024 ctgctcatcattattttttttaccatcaattgctcaactaaactttatggacacattacctatttatagcatccaatgcttagtgcctatataaatggtt 48268123  T
Q  218 ggacactcaaagatgagattgattggtgtattaagcatgagt--taag-ttatatattaaatgaaaaaatgaatgtt-gaacctcataatatgtagtata 313  Q
    |||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  48268124 ggacactcgaagatgagattgattggtgtattaagcatgagttataagtttatatattaaatgaaaaaatgaatgttagaacctcataatatgtagtaaa 48268223  T
Q  314 aaaagtctcattctcttataattgttgtttttggaatttcaaaaaactgttttttgaaaaagattttaagccacctaaagatatt 398  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  48268224 aaaagtctcattcttttataattgttgtttttggaatttcaaaaaactg-tttttgaaaaagatattaagccacctaaagatatt 48268307  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 35120155 - 35120199
Alignment:
Q  24 taaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    |||||||| || ||| |||||||||||||||| ||||||||||||    
T  35120155 taaaatttatttaacatttaaatttattttaaaataaattaatat 35120199  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 34430513 - 34430458
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatatgaaatatatgaca 81  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  34430513 aaaatttgtttaacatttaaatttattttaatataaattaatat-aaaaatatgaca 34430458  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 34400257 - 34400301
Alignment:
Q  24 taaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||    
T  34400257 taaaatttgtttaacttttaaatttattttaaaataaattaatat 34400301  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 31361348 - 31361391
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    |||||||||| || ||||||||||||||||||||||||||||||    
T  31361348 aaaatttgtttaatttttaaatttattttaatataaattaatat 31361391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 11697444 - 11697400
Alignment:
Q  24 taaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    ||||||||||| ||| ||| |||||||||||| ||||||||||||    
T  11697444 taaaatttgtttaacatttgaatttattttaaaataaattaatat 11697400  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 52810196 - 52810224
Alignment:
Q  40 tttaaatttattttaatataaattaatat 68  Q
    |||||||||||||||||||||||||||||    
T  52810196 tttaaatttattttaatataaattaatat 52810224  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 53741213 - 53741268
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatatgaaatatatgaca 81  Q
    |||||||| | ||||| | ||||||||||||||||||||||||| ||| ||||||||    
T  53741213 aaaatttggttaacttctgaatttattttaatataaattaatat-aaaaatatgaca 53741268  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 11443849 - 11443892
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  11443849 aaaatttgtttaacatttaaatttattttaaaataaattaatat 11443892  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 799904 - 799854
Alignment:
Q  18 catacataaaatttgttaaacttttaaatttattttaatataaattaatat 68  Q
    |||| |||||||||||| |||  |||||||||||||||||| |||||||||    
T  799904 catagataaaatttgtttaacaattaaatttattttaatattaattaatat 799854  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 513980 - 513925
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatatgaaatatatgaca 81  Q
    |||||||||  ||| |||||||||||||||| |||||||||||| ||| ||||||||    
T  513980 aaaatttgtgtaacatttaaatttattttaaaataaattaatat-aaaaatatgaca 513925  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 37492722 - 37492681
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaat 66  Q
    |||||||||| ||| |||||||||||||||| ||||||||||    
T  37492722 aaaatttgtttaacatttaaatttattttaaaataaattaat 37492681  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8416344 - 8416289
Alignment:
Q  25 aaaatttgttaaacttttaaatttattttaatataaattaatatgaaatatatgaca 81  Q
    |||||||||| ||| ||| ||||||||||| ||||||||||||| ||| ||||||||    
T  8416344 aaaatttgtttaacatttgaatttattttattataaattaatat-aaaaatatgaca 8416289  T

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