View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_11 (Length: 399)
Name: NF15666_low_11
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 37864998 - 37865373
Alignment:
| Q |
18 |
ctacatctttctctcatttacgagttctatcaaaaattgtaatatggtatagaaaaataattattctgttgcgatatttttcaaaaaagttttgagaaaa |
117 |
Q |
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| T |
37864998 |
ctacatctttctctcatttacgagttctatcaaaaattgtaatatggtatagaaaaataattattctgttgcgatatttttcaaaaaagttttgagaaaa |
37865097 |
T |
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| Q |
118 |
tttcattgaagcaatcttcgacctttttccactttgtttcatcattgaagttttgctttctaaaatccctacgaaataaatatttgagccaatatcacat |
217 |
Q |
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| T |
37865098 |
tttcattgaagcaatcttcgacctttttccactttgtttcaccattgaagttttgctttataaaatccctacgaaataaatatttgagccaatatcacat |
37865197 |
T |
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| Q |
218 |
ttctcggtgtggctctcatgcatgtttacaaagcaaaggatcagaaagaagatttatgcattatggataaatataatagatagatggctggaagcaatat |
317 |
Q |
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| T |
37865198 |
ttctcggtgtggctctcatgcatgtttacaaagcaaaggatcagaaagaagatttatgcattatggataaatataatagatagatggctggaagcaatat |
37865297 |
T |
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| Q |
318 |
aatagataagttagggagaaattgcaagtatgtgcaacaacaaatccaacatcaacaattatgtgtagaattatat |
393 |
Q |
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| T |
37865298 |
aatagataagttagggagaaattgcaagtatgtgcaacaacaaatccaacatcaacaattatgtgtaaaattatat |
37865373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 22674129 - 22674072
Alignment:
| Q |
110 |
tgagaaaatttcattgaagcaatcttcgacctttttccactttgtttcatcattgaag |
167 |
Q |
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| T |
22674129 |
tgagaaaatttcattgaagcaatctacaacattttcctactttgtttcttccttgaag |
22674072 |
T |
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