View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_14 (Length: 346)
Name: NF15666_low_14
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 86 - 329
Target Start/End: Complemental strand, 10396974 - 10396731
Alignment:
| Q |
86 |
gaggagagctatatagcatgaagattttgtcgtgcaaaacacacgaacacatgcttgatttacaaacacactatttacaggcttgttttaattattattt |
185 |
Q |
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| T |
10396974 |
gaggagtgttatatagcatgaagattttgtcgtgcaaaacacacgaacacatgcttgatttacaaacacactatttacaggcttgttttaattattattt |
10396875 |
T |
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| Q |
186 |
taatgttaaagagaaaggaaaataaaaaatctccaaaattgatcctcataattgtggcagcatatgattctagtcccactgtcaaccgcatgcacatcac |
285 |
Q |
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| T |
10396874 |
taatgttaaagagaaaggaaaataaaaaatctccaaaattgatcctcataatcgtggcagcatatgattctagtaccactgtcaaccgcatgcacatcac |
10396775 |
T |
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| Q |
286 |
ctcaacttttgttgtcatctttgtcatagcaattgtctttgcat |
329 |
Q |
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| T |
10396774 |
ctcaacttttgctgtcatctttgtcatagcaattgtctttgcat |
10396731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 48069343 - 48069233
Alignment:
| Q |
155 |
actatttacaggcttgttttaattattattttaatgttaaagagaaaggaaaataaaaaat-ctccaaaattgatcctcataattgtggcagcatatgat |
253 |
Q |
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| T |
48069343 |
actatttataggcttgttttaattattattttaatattaaagagaaaggcaaataaaaaatgctccaaaattgatcctcataatcgtggcagcatatgat |
48069244 |
T |
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| Q |
254 |
tctagtcccac |
264 |
Q |
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| T |
48069243 |
tctagtaccac |
48069233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 8913935 - 8913828
Alignment:
| Q |
105 |
gaagattttgtcgtgcaaaacacacgaacacatgcttgatttacaaacacactatttacaggcttgttttaattattattttaatgttaaagagaaagga |
204 |
Q |
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|||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| ||||| |
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| T |
8913935 |
gaaggttttgtcgtgcaaaacacatgaactcatgcttgatttacaaacacactatttataggcttgttttaat---tattttaatattaaagataaaggc |
8913839 |
T |
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| Q |
205 |
aaataaaaaat |
215 |
Q |
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||||||||||| |
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| T |
8913838 |
aaataaaaaat |
8913828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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