View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_18 (Length: 325)
Name: NF15666_low_18
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 30918195 - 30918503
Alignment:
| Q |
1 |
cgatagtccaataaacaaggcatattcaatgttacttgaagacttaaaaaggaaattcaattatttaaataataaattaagaaagatatagttattctaa |
100 |
Q |
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| T |
30918195 |
cgatagtccaataaacaaggcatattcaatgttacttgaagacttaaaaaggaaattcaattatttaaataataaattaagaaagatatagttattctaa |
30918294 |
T |
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| Q |
101 |
ttcaattggaagttatttatggatggcgcgtatatataatgaagaagatgacgaatactgaccaatacaatcgtaacacctcattcagtttcatcattcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30918295 |
ttcaattggaagttatttatggatggcgcgtatatataatgaagaagatgacgaatactgaccaatacaatcgtaacacctcattcagtttcaccattcc |
30918394 |
T |
|
| Q |
201 |
agtttttgttcttgttctctatacacctcactctaactcgtcttcttgactcgttcgagttagggtgctttctcattcgtcaaaccctcaattcttcagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30918395 |
agtttttgttcttgttctctatacacctcactctaactcgtcttcttgactcgttcgagttagggtgctttctcattcgtcaaaccctcaattcttcagg |
30918494 |
T |
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| Q |
301 |
tttcttttt |
309 |
Q |
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||||||||| |
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| T |
30918495 |
tttcttttt |
30918503 |
T |
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