View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_20 (Length: 271)
Name: NF15666_low_20
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 27 - 262
Target Start/End: Complemental strand, 12455409 - 12455174
Alignment:
| Q |
27 |
atgaaggttatcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatg |
126 |
Q |
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| T |
12455409 |
atgaaggttatcagcagaccaattcacattcaaccacagttttggctatacgccctgtctataactttttacaataatgtaagaagcgtgctagactatg |
12455310 |
T |
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| Q |
127 |
aagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatccgtgtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgt |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12455309 |
aagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatccgggtccgtgtccatgtatgtgcttcgtaggtcgcatgttcaaatcttgt |
12455210 |
T |
|
| Q |
227 |
aaacgggctctctgcttggaaactaaggctctgtgc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12455209 |
aaacgggctctctgcttggaaactaaggctctgtgc |
12455174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 5654501 - 5654557
Alignment:
| Q |
120 |
gactatgaagcacaaatactcctcggattaggagttttccgatgtcgaatatgtatc |
176 |
Q |
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| T |
5654501 |
gactatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatc |
5654557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 30621753 - 30621782
Alignment:
| Q |
122 |
ctatgaagcacaaatactcctcggattagg |
151 |
Q |
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| T |
30621753 |
ctatgaagcacaaatactcctcggattagg |
30621782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 21211415 - 21211381
Alignment:
| Q |
120 |
gactatgaagcacaaatactcctcggattaggagt |
154 |
Q |
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| T |
21211415 |
gactatgaagcacaaacactcctcggattaggagt |
21211381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 47132212 - 47132184
Alignment:
| Q |
123 |
tatgaagcacaaatactcctcggattagg |
151 |
Q |
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| T |
47132212 |
tatgaagcacaaatactcctcggattagg |
47132184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 11596398 - 11596427
Alignment:
| Q |
122 |
ctatgaagcacaaatactcctcggattagg |
151 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
11596398 |
ctatgaagcacaaatactcctcggattagg |
11596427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 38134335 - 38134383
Alignment:
| Q |
122 |
ctatgaagcacaaatactcctcggattaggagttttccgatgtcgaata |
170 |
Q |
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|||||||||||| | ||||||||||||||| || | ||||||||||||| |
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| T |
38134335 |
ctatgaagcacatacactcctcggattaggcgtgtcccgatgtcgaata |
38134383 |
T |
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