View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_3 (Length: 649)
Name: NF15666_low_3
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 359 - 631
Target Start/End: Original strand, 41921480 - 41921752
Alignment:
| Q |
359 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcattttt |
458 |
Q |
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| T |
41921480 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttgctactttatatgccaagacttatgcattttt |
41921579 |
T |
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| Q |
459 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
558 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921580 |
ccttaatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
41921679 |
T |
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| Q |
559 |
ttatatatgttcatatttctaacttttgtttatagtatcctccacgagaacatgatgatccatccccttatct |
631 |
Q |
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| T |
41921680 |
ttatattagttcatatttctaacttttgtttatagtatccttcacgagaacatgatgatccatccccttatct |
41921752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 112 - 307
Target Start/End: Original strand, 41921273 - 41921468
Alignment:
| Q |
112 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
211 |
Q |
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| T |
41921273 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
41921372 |
T |
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| Q |
212 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
307 |
Q |
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| T |
41921373 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 41921146 - 41921239
Alignment:
| Q |
18 |
gaagaaggtattgagagcgatgaagaagatattgaggatattccaacatttaacctcagtagtcaagaatcatcatcatcatgcctgccaatgtatg |
114 |
Q |
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| T |
41921146 |
gaagaagatattgagagtgatgaagaagatattgaggatattccaacatttaacatcagtagtcaagaatca---tcatcatgtctgccaatgtatg |
41921239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 385 - 566
Target Start/End: Original strand, 1698822 - 1699003
Alignment:
| Q |
385 |
ttttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttt--tcctttatctgttcagttatgtcct |
482 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
1698822 |
ttttaacaacatgtagatatttcaaatttaaataaattacttactacttcatatgctaagac--atgcatttttttcctttatctattcagttatgtcct |
1698919 |
T |
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| Q |
483 |
cacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaagttatatat |
566 |
Q |
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| T |
1698920 |
cacggataatcatcctctcctaactgaggtaggtatcaaaataatcacgaagtaaattgttatacacacatgaaagttatatat |
1699003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 1695370 - 1695489
Alignment:
| Q |
122 |
atctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgtaagtttctcac |
221 |
Q |
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||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
1695370 |
atctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcac |
1695469 |
T |
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| Q |
222 |
tttcctatattcttatgtta |
241 |
Q |
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|||||||||||||||||||| |
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| T |
1695470 |
tttcctatattcttatgtta |
1695489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 459 - 566
Target Start/End: Original strand, 36000637 - 36000744
Alignment:
| Q |
459 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
558 |
Q |
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||||||| ||||||||||||| || | ||||||||||||||| |||| ||||||| || |||||||||||||||||| |||| || |||||| ||| |
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| T |
36000637 |
cctttatttgttcagttatgttcttaaggataatcaccctctcctagttgaggtaagtcccaaaataatcacaaagtacactttaatacacacatcaaaa |
36000736 |
T |
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| Q |
559 |
ttatatat |
566 |
Q |
| |
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|||||||| |
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| T |
36000737 |
ttatatat |
36000744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 1699046 - 1699085
Alignment:
| Q |
592 |
agtatcctccacgagaacatgatgatccatccccttatct |
631 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |
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| T |
1699046 |
agtatcctccacgagaacatgatgatccttccccttatct |
1699085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 530
Target Start/End: Original strand, 1309963 - 1310097
Alignment:
| Q |
396 |
aatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttttcctttatctgttcagttatgtcctcacggataatcac |
495 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| || |||| | | |||| ||||||| |||||||||||||| |||||| ||||| |
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| T |
1309963 |
aatagatatttcaaatttaaagaagttacttactactttgcatgctaatccttacgtaattttgttttatctattcagttatgtcctaacggatgatcac |
1310062 |
T |
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| Q |
496 |
cctcttctagctgaggtaggtgtcaaaataatcac |
530 |
Q |
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||||| |||| |||||||| |||||||||||| |
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| T |
1310063 |
cctctcctagtcaaggtaggtagcaaaataatcac |
1310097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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