View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_4 (Length: 556)
Name: NF15666_low_4
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 540
Target Start/End: Original strand, 36536273 - 36536794
Alignment:
| Q |
19 |
aagaacctctcttgataatttataatgttataggaaaactcagctccaatatcatcttcaggaagccaagcaacaactccaccaacactatgtatcattt |
118 |
Q |
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| T |
36536273 |
aagaacctctcttgataatttataatgttataggaaaactcagctccaacatcatcttcaggaagccaagcaacaactccaccaacactatgtatcattt |
36536372 |
T |
|
| Q |
119 |
tatctgtagccataagaacttcatttttccagacaccaacaggacgctctaaactcgtaaacataccaagagtttgcaccttcatccaacactcaacacc |
218 |
Q |
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| T |
36536373 |
tatctgtagccataagaacttcatttttccagacaccaacaggacgctctaaactcgtaaacataccaagagtttgcaccttcatccaacactcaacacc |
36536472 |
T |
|
| Q |
219 |
ttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaatccttataaattacaagt |
318 |
Q |
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| T |
36536473 |
ttcatattcatcagacaaaatccacaaatctaaccattgttccatacttttactttttaaacaagtaatcaatgaaacagaatccttataaattacaagt |
36536572 |
T |
|
| Q |
319 |
ttcttataaacttcatcacagtctttaaaagaattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaagagataatcacttcatgac |
418 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536573 |
ttcttataaacttcatcacagtctttaaaaggattaatcggcaactcaatcttgctaataacattgtcaattgaattaaaagagataatcacttcatgac |
36536672 |
T |
|
| Q |
419 |
taaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcccttcaaaatcaaattttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36536673 |
taaccttttcagttacctccatagcaatccaaaacaaggttccttccattgtcacattgttctcagtccaaaacaaatgtcccttcaaaatcaaattttg |
36536772 |
T |
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| Q |
519 |
atcacaacccttcatctctctc |
540 |
Q |
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|||||||||||| || |||||| |
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| T |
36536773 |
atcacaaccctttatttctctc |
36536794 |
T |
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