View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15666_low_5 (Length: 535)
Name: NF15666_low_5
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 31340358 - 31340790
Alignment:
| Q |
18 |
ataaaatcaataaaatctctgtaaaacatctttatttatctgctttagtatttttccctcatctttatttatatgctgcattgtggttgtaatgcattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31340358 |
ataaaatcaataaaatctctgtaaaacatctttatttatctgttttagtatttttccctcatctttatttatatgctgcattgtggttgtaatgcatttg |
31340457 |
T |
|
| Q |
118 |
tttttcttctgatatactggttttgattttgaagttcaccaatgtttgagctatgttgaatacattaattaagagtatatttagaactaattaaggaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31340458 |
tttttcttctgatatactggttttgattttgaagtccaccgatgtttgaactatgttgaatacattgattaagagtatatttagaactaattaaggaaga |
31340557 |
T |
|
| Q |
218 |
agttatatgagcgcgcgattgagccttattcttacgaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatgaaggagt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31340558 |
agttatatgagcg----attgagccttattcttacaaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatggaggagt |
31340653 |
T |
|
| Q |
318 |
taatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340654 |
taatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagta |
31340753 |
T |
|
| Q |
418 |
tatcttccccacagagcaaagcataacacatcaagag |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
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|
| T |
31340754 |
tatcttccccacagagcaaagcatagcacatcaagag |
31340790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 31333628 - 31334060
Alignment:
| Q |
18 |
ataaaatcaataaaatctctgtaaaacatctttatttatctgctttagtatttttccctcatctttatttatatgctgcattgtggttgtaatgcattta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31333628 |
ataaaatcaataaaatctctgtaaaacatctttatttatctgttttagtatttttccctcatctttatttatatgctgcattgtggttgtaatgcatttg |
31333727 |
T |
|
| Q |
118 |
tttttcttctgatatactggttttgattttgaagttcaccaatgtttgagctatgttgaatacattaattaagagtatatttagaactaattaaggaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31333728 |
tttttcttctgatatactggttttgattttgaagtccaccgatgtttgaactatgttgaatacattgattaagagtatatttagaactaattaaggaaga |
31333827 |
T |
|
| Q |
218 |
agttatatgagcgcgcgattgagccttattcttacgaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatgaaggagt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31333828 |
agttatatgagcg----attgagccttattcttacaaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatggaggagt |
31333923 |
T |
|
| Q |
318 |
taatactacagttaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagta |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31333924 |
taatactacaattaaccgtgtacaaatattttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagta |
31334023 |
T |
|
| Q |
418 |
tatcttccccacagagcaaagcataacacatcaagag |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31334024 |
tatcttccccacagagcaaagcatagcacatcaagag |
31334060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 63 - 454
Target Start/End: Complemental strand, 1656879 - 1656493
Alignment:
| Q |
63 |
tagtatttttccctcatctttatttatatgctgcattgtggttgtaatgcatttatttttcttctgatatactggttttgattttgaagttcaccaatgt |
162 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
1656879 |
tagtatttttccttcatctttatttatatgctacattgtggttgtaatgcatttatttt-cttctgatatactggttttgattttgaagttcaccgatgt |
1656781 |
T |
|
| Q |
163 |
ttgagctatgttgaatacattaattaagagtatatttagaactaattaaggaagaagttatatgagcgcgcgattgagccttattcttacgaccctgtag |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
1656780 |
ttgagctatgttgaatacattgattaagagtatatttagaactaattaaggaagaagttatatgagcg----attgagccttattcttacaaccctgtag |
1656685 |
T |
|
| Q |
263 |
gtttagtttcccttagaaagttatttattttggtaggttagctgaatgaaggagttaatactacagttaaccgtgtacaaatattttgtggtttatttta |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1656684 |
gtttagtttcccttagaaagttatttattttggtaggttagctgaatggaggagttaatgctacagttaaccgtgtacaaatattttgtggtttatttta |
1656585 |
T |
|
| Q |
363 |
ggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagcaaagcataacacatcaagag |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1656584 |
ggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagcaaagcatagcacatcaagag |
1656493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 145 - 454
Target Start/End: Original strand, 4683990 - 4684295
Alignment:
| Q |
145 |
tttgaagttcaccaatgtttgagctatgttgaatacattaattaagagtatatttagaactaattaaggaagaagttatatgagcgcgcgattgagcctt |
244 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
4683990 |
tttgtagttcaccgatgtttgagctatgttgaatacattgattaagagtatatttagaactaattaaggaagaagttatatgagcg----attgagcctt |
4684085 |
T |
|
| Q |
245 |
attcttacgaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatgaaggagttaatactacagttaaccgtgtacaaat |
344 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
4684086 |
attcttacaaccctgtaggtttagtttcccttagaaagttatttattttggtaggttagctgaatggaggagttaatactacatttaaccgtgtacaaat |
4684185 |
T |
|
| Q |
345 |
attttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagcaaagcataac |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
4684186 |
attttgtggtttattttaggtttagtttttaataagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagcaaagcatagc |
4684285 |
T |
|
| Q |
445 |
acatcaagag |
454 |
Q |
| |
|
|||||||||| |
|
|
| T |
4684286 |
acatcaagag |
4684295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 90 - 454
Target Start/End: Complemental strand, 644193 - 643821
Alignment:
| Q |
90 |
atgctgcattgtggttgtaatgcatttatttttcttctgatatactggttttgattttgaagttcaccaatgtttgagctatgttgaatacattaattaa |
189 |
Q |
| |
|
||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| ||||| |
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|
| T |
644193 |
atgctgcatcgtggttgtaatgcattc-ttcttcttctgatatactggttttgatattgaagttcatcgatgtttgagctatgttgaatacattgattaa |
644095 |
T |
|
| Q |
190 |
gagtatatttagaactaattaaggaagaagttatatgagcgcgcgattgagccttattcttacgaccctgtaggtttagtttcccttagaaagttattta |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| | |||| |||||||||||||||||||||||||||||| |
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|
| T |
644094 |
gagtatatttagaactaattaaggaagaagttatat----gggcgattgagcattattcttgtggccctataggtttagtttcccttagaaagttattta |
643999 |
T |
|
| Q |
290 |
ttttggtaggttagctgaatgaaggagttaatactacagttaaccg-------------tgtacaaatattttgtggtttattttaggtttagtttttaa |
376 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
643998 |
ttttggtaggttagctgaatggaggagttaatactatagttaaccgatctttacatttatgtacaaatattttgtggtttattttaggtttagtttttaa |
643899 |
T |
|
| Q |
377 |
taagatattaagcagcggacggaataatttcctcatgagtatatcttccccacagagcaaagcataacacatcaagag |
454 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
643898 |
taagatattgagcagcggacgacataatttcctcatgagtatatcttccccatagagcaaagcatagcacatgaagag |
643821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 644305 - 644245
Alignment:
| Q |
18 |
ataaaatcaataaaatctctgtaaaacatctttatttatctgctttagtatttttccctca |
78 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
644305 |
ataaaatcaataaaatctctgtaaaaaatctttatttatctgctttagtacttttccctca |
644245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 643640 - 643577
Alignment:
| Q |
470 |
caataggaaatgcttaagatt-aagtctgaatttctagccccatcattttctctctgctcctcc |
532 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
643640 |
caatagcaaatgcttaagatttaagtctgaatttctagccccatcgttttctctgttctcctcc |
643577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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