View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_6 (Length: 523)
Name: NF15666_low_6
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 35051034 - 35050531
Alignment:
| Q |
1 |
acaaaaatagcagcaactttagcttataaacctagaatagaataactggggcctaatatatctttctatagaaaaattcttattgttataatatatatgc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35051034 |
acaaaaatagcagcaactttagcttataaacctagaatagaataactggggcctaatatatctttctatagaaaaattcttattgttataatatatatgc |
35050935 |
T |
|
| Q |
101 |
atgtagcatctatcttgtaaattaatcgggatattcaaggcataatttgtcatgttgaaagacaaaaattatggtgctttcatttgtagattgatacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050934 |
atgtagcatctatcttgtaaattaatcgggatattcaaggcataatttgtcatgttgaaagacaaaaattatggtgctttcatttgtagattgatacctc |
35050835 |
T |
|
| Q |
201 |
caaagacagacttagatgtttccaccatttcttagttattaaccatttacatgttattttgatgcctaattggaattaatttatatacacgaagagtgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050834 |
caaagacagacttagatgtttccaccatttcttagttattaaccatttacatgttattttgatgcctaattggaattaatttatatacacgaagagtgta |
35050735 |
T |
|
| Q |
301 |
aaaccgttttatacatgtattcagtcaaatcacaatgtcacttttttagattagtttctaaaatatctctaaacatatacatttggtgttatttgattta |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050734 |
aaaccgttttatac----attcagtcaaatcacaatgtcacttttttagattaatttctaaaatatctctaaacatatacatttggtgttatttgattta |
35050639 |
T |
|
| Q |
401 |
atgcatgtataaaaaagttttacaccatgcatgaaaatgaatctnnnnnnnntaattaataacatgatatttcaaatatatctgaatcctgctctccacc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35050638 |
atgcatgtataaaaaagttttacaccatgcatgaaaatgaatctaaaaaaataaattaataacatgatatttcaactatatctgaatcctgctctccacc |
35050539 |
T |
|
| Q |
501 |
ttgcacat |
508 |
Q |
| |
|
||||||| |
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|
| T |
35050538 |
ctgcacat |
35050531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 371
Target Start/End: Original strand, 28583262 - 28583337
Alignment:
| Q |
298 |
gtaaaaccgttttatacatgtattcagtcaaatcaca--atgtcacttttttagattagtttctaaaatatctcta |
371 |
Q |
| |
|
||||||| |||||||| | |||||| |||||||||| ||||||||||| ||||| | ||||||||||||||||| |
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|
| T |
28583262 |
gtaaaacttttttatacgtatattcaatcaaatcacaccatgtcacttttatagatcaatttctaaaatatctcta |
28583337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 6914091 - 6914018
Alignment:
| Q |
343 |
tttttagattagtttctaaaatatctctaaacatatacatttggtgttatttgatttaatgcatgtataaaaaa |
416 |
Q |
| |
|
||||||| ||| |||||||||||||| |||| |||| ||||||||| ||||||||| || || ||||||||| |
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|
| T |
6914091 |
tttttaggttaatttctaaaatatctataaaaatatctatttggtgtaatttgatttgatacacatataaaaaa |
6914018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 43970355 - 43970396
Alignment:
| Q |
391 |
atttgatttaatgcatgtataaaaaagttttacaccatgcat |
432 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||| |
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|
| T |
43970355 |
atttgattgaatgcatgtttaaaaaagttttacacgatgcat |
43970396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 21051354 - 21051326
Alignment:
| Q |
343 |
tttttagattagtttctaaaatatctcta |
371 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
21051354 |
tttttagattagtttctaaaatatctcta |
21051326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 42151596 - 42151560
Alignment:
| Q |
342 |
ttttttagattagtttctaaaatatctctaaacatat |
378 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| |
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|
| T |
42151596 |
ttttttagattagtttctaagatatctctaaaaatat |
42151560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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