View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15666_low_8 (Length: 451)
Name: NF15666_low_8
Description: NF15666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15666_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 13153357 - 13153780
Alignment:
| Q |
18 |
tctacttacttgtcaagcgaagatttactgtaaacagagcaaatagtagcagtagagaagccattacattcctgttgcctgcgatcatgcttggaaagaa |
117 |
Q |
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| T |
13153357 |
tctacttacttgtcaagcgaagatgtactgtaaacagagcaaatagtagcagtagagaagccattacattcctgttgcctgtgatcatgcttggaaagaa |
13153456 |
T |
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| Q |
118 |
agctatagcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatataggagaagagattcattg |
217 |
Q |
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| T |
13153457 |
agctatagcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatataggagaagagattcattg |
13153556 |
T |
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| Q |
218 |
tgcagtgatcaataatatctcatgggcatgggccattagcaattagcatactaatataaaggtcaaaatatgagactttatgtttatcaatatgattcaa |
317 |
Q |
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| T |
13153557 |
tgcagtgatcaataatatctcatgggcatgggccattagtaattagcatactaatataaaggtcaaaatatgagactttatgtttatcaatatgattcaa |
13153656 |
T |
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| Q |
318 |
tgaattctatggctatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgttatgggtagatatgaatc |
417 |
Q |
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| T |
13153657 |
tgaattctatggctatcactttcctctttagaaatttcttgtcctttttaatt--aattcatgatttcattagactagtcgttatgggtagatatgaatc |
13153754 |
T |
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| Q |
418 |
tctattgttagtcaatagcctatgct |
443 |
Q |
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| T |
13153755 |
tctattgttagtcaatagcttatgct |
13153780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 13147744 - 13147925
Alignment:
| Q |
20 |
tacttacttgtcaagcgaagatttactgtaaacagagcaaatagtagcagtagagaagccattacattcctgttgcctgcgatcatgcttggaaagaaag |
119 |
Q |
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| T |
13147744 |
tacttacttgtcaagcgaagagttactgtaaacagtgcaaacagtagcagcagagaagccattacggtactgttgcttgtgatcatgctaggaaagaaag |
13147843 |
T |
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| Q |
120 |
ctatagcacaaa-gtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttatatag |
201 |
Q |
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| T |
13147844 |
ctttaacacaaaggaagtgtaat-aaagcttgagtattaagttgagtcctaaacttatttttgcaagtcacatatttatatag |
13147925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 300 - 440
Target Start/End: Original strand, 13150689 - 13150825
Alignment:
| Q |
300 |
tttatcaatatgattcaatgaattctatggctatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgt |
399 |
Q |
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| T |
13150689 |
tttatcaattggattcaatgaattctatggctatcactttcatctataaaaatttcttgtcctttataatt--aattcatactttcattagactagtcgt |
13150786 |
T |
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| Q |
400 |
tatgggtagatatgaatctctattgttagtcaatagcctat |
440 |
Q |
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| T |
13150787 |
--gtggcagatatgaatctctgttgttagtcaatagcctat |
13150825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 13150521 - 13150617
Alignment:
| Q |
100 |
gatcatgcttggaaagaaagctatagcacaaagtagtgtaataaaaacttgagtattaggctgagtcctatacttatttttgcaagtcacatatttat |
197 |
Q |
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| T |
13150521 |
gatcatgctaggaaatagagctatagcacaaaggagtgtaataaaa-cttgagtattaggctgtgccctatacttactttgacaagccacatatttat |
13150617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 13147995 - 13148073
Alignment:
| Q |
331 |
tatcactttcctctttagaaatttcttgtcctttttaattaaaattcatgatttcattagactagtcgttatgggtagata |
411 |
Q |
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||||||||||||| |||||| || ||||||||| ||||||| ||||| |||||| ||||||||||||| |||||||||| |
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| T |
13147995 |
tatcactttcctcaatagaaactttttgtcctttataattaa--ttcataatttcagtagactagtcgttttgggtagata |
13148073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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