View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15667_high_11 (Length: 368)
Name: NF15667_high_11
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 33922470 - 33922112
Alignment:
| Q |
7 |
agatgaaggacacgtgtttcatttgtttgaccctaccaaggaaaaatctgtggatcttgttaaaaggttcggatcttttatgatacaggttgagaaagac |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33922470 |
agatgaaggacatgtgtttcatttgtttgaccctaccaaggaaaaatctgtggatcttgttaaaaggttcggatcttttatgatacaggttgagaaagac |
33922371 |
T |
|
| Q |
107 |
gtacgttcttcttcgtcattgtgact-----------------ttaatactaaaatcgagtgttggagtgtttttgggactatggaaccttgaataattt |
189 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33922370 |
gttcgttcttcttcgtcattgtgactctgctgtgagagtgactttaatactaaaatcgagtgttggagtgtttttgggactatgggaccttgaataattt |
33922271 |
T |
|
| Q |
190 |
agtactaccagatagatggagtaatttgtttagttttgaattttgatcacttttggtctgtaacttgtgttgaattctcaatgtccatatggacatttat |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
33922270 |
agtactaccagat----ggagtaatttgtttagtttttaattttgatcacttttggtttgtaacttgtgttgaattctcgatgtccatatgtacatttat |
33922175 |
T |
|
| Q |
290 |
aatgaatgtannnnnnnnnnnnccttgaatttatctattgttattgcgtgtgatttcatggtt |
352 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33922174 |
aatgaatgtatttttgttttttcctttaatttatctattgttattgcgtgtgatttcatggtt |
33922112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University