View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_high_13 (Length: 343)
Name: NF15667_high_13
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_13 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 45787206 - 45786889
Alignment:
| Q |
19 |
cctcaccgtgaactcaccgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccggcggtggaaccatgttccctaatg |
118 |
Q |
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| T |
45787206 |
cctcaccgtgaactcactgttgaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccggcggtggaaccatgttccctaatg |
45787107 |
T |
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| Q |
119 |
gagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatactggctgtggggtatactctctaat |
218 |
Q |
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| T |
45787106 |
gagctggtgcatatattgatgatataggaaagttgataaatctcaaagatggttctattaggactgcacttgatactggctgtggggtatactctctaat |
45787007 |
T |
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| Q |
219 |
tcttgttcttgctcttattttttattgtaaaaatatagtaaatcgaaatatttgtgcatttaattagggattctgtcaaaaaatagttttatttggggga |
318 |
Q |
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| T |
45787006 |
tcttgttcttgctcttattttttattctaaaaatatagtaaatcgaaatatttgtgcatttaattagggattctgtcaaaaaatagtttaatttggggga |
45786907 |
T |
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| Q |
319 |
tacctttgtcctttgctt |
336 |
Q |
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| T |
45786906 |
tacctttgtcttttgctt |
45786889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 70562 - 70395
Alignment:
| Q |
40 |
gaaaaagctgttcagaattggatccggtacgacggtgatcggttcttttttcccggcggtggaaccatgttccctaatggagctggtgcatatattgatg |
139 |
Q |
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| T |
70562 |
gaaaaagctggtcaaaattggatccgttttgacggtgataagttccgttttcctggtggtggtactatgtttcctaatggtgctgataagtatattgatg |
70463 |
T |
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| Q |
140 |
atataggaaagttgataaatctcaaagatggttctattaggactgcacttgatactggctgtggggta |
207 |
Q |
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| T |
70462 |
atattgggaagttgattgatcttgaagatggttctgttagaactgctgttgatactggttgtggggta |
70395 |
T |
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