View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_high_14 (Length: 341)
Name: NF15667_high_14
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 44728577 - 44728338
Alignment:
| Q |
19 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatataaatattctt |
118 |
Q |
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| T |
44728577 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatacaaatattctt |
44728478 |
T |
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| Q |
119 |
ctcctccaccaccagtgcatg-taagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagtgc |
217 |
Q |
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| T |
44728477 |
ctcctccaccaccagtgcatgttaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccaccagtgc |
44728378 |
T |
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| Q |
218 |
atcattacagccctaaaccttactaccactctccaccacc |
257 |
Q |
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|||| ||||||||| || |||||||||||||||||||| |
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| T |
44728377 |
atcacgtcagccctaagccctactaccactctccaccacc |
44728338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 44728499 - 44728296
Alignment:
| Q |
19 |
aagaaaccttacaagtattcttctcctcctccaccat---atgtcca-ccctaaaccttactaccattctccaccacccccaaagaaaccatataaatat |
114 |
Q |
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| T |
44728499 |
aagaaaccatacaaatattcttctcctccaccaccagtgcatgttaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatat |
44728400 |
T |
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| Q |
115 |
tcttctcctccaccaccagtgcat---gtaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatattcctctcctcctccac |
211 |
Q |
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| T |
44728399 |
tcctctcctcctccaccagtgcatcacgtcagccctaagccctactaccactctccaccaccaccaaagaagccatacaaatactcatcccctccaccac |
44728300 |
T |
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| Q |
212 |
cagt |
215 |
Q |
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|||| |
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| T |
44728299 |
cagt |
44728296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 44728589 - 44728542
Alignment:
| Q |
166 |
ccaccaccaccaaagaagccatacaaatattcctctcctcctccacca |
213 |
Q |
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||||||||||||||||| || ||||| ||||| ||||||||||||||| |
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| T |
44728589 |
ccaccaccaccaaagaaaccttacaagtattcttctcctcctccacca |
44728542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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