View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15667_high_17 (Length: 290)

Name: NF15667_high_17
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15667_high_17
NF15667_high_17
[»] chr1 (11 HSPs)
chr1 (21-286)||(6487520-6487786)
chr1 (225-286)||(1673366-1673427)
chr1 (226-286)||(1994951-1995011)
chr1 (226-286)||(27325752-27325812)
chr1 (227-286)||(44797590-44797649)
chr1 (228-286)||(2403049-2403107)
chr1 (232-286)||(29637334-29637388)
chr1 (227-286)||(32267589-32267648)
chr1 (228-286)||(527023-527081)
chr1 (254-284)||(34311347-34311377)
chr1 (228-280)||(40030838-40030890)
[»] chr8 (9 HSPs)
chr8 (229-286)||(43066028-43066085)
chr8 (225-286)||(45413662-45413723)
chr8 (227-286)||(1993764-1993823)
chr8 (228-286)||(14342313-14342371)
chr8 (229-286)||(27497174-27497230)
chr8 (228-286)||(2599531-2599589)
chr8 (236-286)||(8368495-8368545)
chr8 (224-286)||(28897991-28898053)
chr8 (228-285)||(4077086-4077143)
[»] chr6 (6 HSPs)
chr6 (225-286)||(14314110-14314171)
chr6 (231-286)||(1244680-1244735)
chr6 (228-286)||(9045833-9045891)
chr6 (228-280)||(34792781-34792833)
chr6 (226-284)||(9521943-9522001)
chr6 (234-286)||(29429590-29429642)
[»] chr4 (14 HSPs)
chr4 (226-286)||(5817504-5817564)
chr4 (226-286)||(17044001-17044061)
chr4 (228-286)||(37605815-37605873)
chr4 (228-286)||(45996018-45996076)
chr4 (228-286)||(55281208-55281266)
chr4 (229-286)||(25164595-25164652)
chr4 (223-274)||(39631274-39631325)
chr4 (228-282)||(25784036-25784090)
chr4 (228-286)||(32525146-32525204)
chr4 (228-282)||(43749092-43749146)
chr4 (226-274)||(20107108-20107156)
chr4 (231-286)||(51579323-51579378)
chr4 (230-280)||(48525328-48525378)
chr4 (229-286)||(32290215-32290272)
[»] chr7 (3 HSPs)
chr7 (227-286)||(46576366-46576425)
chr7 (227-286)||(48460658-48460717)
chr7 (226-286)||(31741041-31741101)
[»] chr5 (3 HSPs)
chr5 (228-286)||(13988247-13988305)
chr5 (228-286)||(36890377-36890435)
chr5 (227-286)||(11247191-11247250)
[»] chr3 (11 HSPs)
chr3 (228-286)||(50989203-50989261)
chr3 (228-286)||(51092335-51092393)
chr3 (229-286)||(23004757-23004814)
chr3 (231-286)||(38247801-38247856)
chr3 (228-286)||(8330716-8330774)
chr3 (223-282)||(9271105-9271164)
chr3 (228-279)||(29915090-29915141)
chr3 (228-279)||(29964243-29964294)
chr3 (232-286)||(33288136-33288190)
chr3 (229-286)||(12224127-12224184)
chr3 (226-282)||(44092518-44092574)
[»] chr2 (10 HSPs)
chr2 (227-285)||(14945861-14945919)
chr2 (228-282)||(32599376-32599430)
chr2 (229-286)||(13697089-13697146)
chr2 (228-283)||(4434717-4434772)
chr2 (226-275)||(5562934-5562983)
chr2 (231-286)||(36272785-36272840)
chr2 (227-286)||(40095262-40095321)
chr2 (228-286)||(14242639-14242697)
chr2 (229-286)||(42061355-42061412)
chr2 (228-272)||(23860302-23860346)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 6487520 - 6487786
Alignment:
Q  21 ggtgttaaatgttcaacacctatgaaattgcaagaaaacccctaaaaaatttaattttctaagttattttatttttgtaatttaacttatgacatataaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6487520 ggtgttaaatgttcaacacctatgaaattgcaagaaaacccctaaaaaattcaattttctaagttattttatttttgtaatttaactaatgacatataaa 6487619  T
Q  121 ttattaatccactaaataacttcacatcatcat---attgtatgacacgttcatttaaaatacggcacatcatcatttttgttctttgtnnnnnnnntct 217  Q
    |||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||| ||||||||||||| ||||||| ||          |    
T  6487620 ttattaatccactaaataacttcacatcatcatcagattgt-tgacacgttcatttaaaatacgacacatcatcatttatgttcttcgtaaaaaaac-at 6487717  T
Q  218 attgcttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  6487718 attgcttaatgagtagtgatacatagaccaatttaggtggcatgtaccacttgtacatccacacacaat 6487786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 1673366 - 1673427
Alignment:
Q  225 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  1673366 aatgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 1673427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 1994951 - 1995011
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  1994951 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 1995011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 27325812 - 27325752
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  27325812 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 27325752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 44797649 - 44797590
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  44797649 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 44797590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 2403107 - 2403049
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  |||  |||||||||||||||||||| |||||||||||    
T  2403107 gagtagtgatacatagaccatcttagatggcatgtaccacttgtacacccacacacaat 2403049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 29637388 - 29637334
Alignment:
Q  232 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  29637388 agtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 29637334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 32267648 - 32267589
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  ||| ||||||||||| | ||||||| |||||||||||    
T  32267648 tgagtagtgatacatagaccatcttaagtggcatgtacaatttgtacacccacacacaat 32267589  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 527081 - 527023
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| |||||||    
T  527081 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaat 527023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 284
Target Start/End: Complemental strand, 34311377 - 34311347
Alignment:
Q  254 gtggcatgtaccacttgtacatccacacaca 284  Q
    |||||||||||||||||||||||||||||||    
T  34311377 gtggcatgtaccacttgtacatccacacaca 34311347  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 40030838 - 40030890
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 280  Q
    |||||||||||||||||| |  ||| || |||||||||||||||||| |||||    
T  40030838 gagtagtgatacatagaccaccttaggtagcatgtaccacttgtacacccaca 40030890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 43066085 - 43066028
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  43066085 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacacaat 43066028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 45413723 - 45413662
Alignment:
Q  225 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||||| |  ||| |||||||||||||||| |||||||| |||||||    
T  45413723 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaat 45413662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 1993823 - 1993764
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||    
T  1993823 tgagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaat 1993764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 14342371 - 14342313
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||    
T  14342371 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaat 14342313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 27497174 - 27497230
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||| |||| | |||| ||||||||||||||||||||||||||| |||||    
T  27497174 agtagtgataca-agaccactttaggtggcatgtaccacttgtacatccacagacaat 27497230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 2599531 - 2599589
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| |||||||||||||||| |||| ||| |||||||    
T  2599531 gagtagtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaat 2599589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 8368545 - 8368495
Alignment:
Q  236 atacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 8368495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 28897991 - 28898053
Alignment:
Q  224 taatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||||| |  ||| ||||||| |||||||| |||| ||| |||||||    
T  28897991 taatgagtagtgatacatagaccaccttaggtggcatataccacttatacacccatacacaat 28898053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 4077143 - 4077086
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaa 285  Q
    ||||||||||| |||||| |  ||| ||||||||||||||||||| | ||||||||||    
T  4077143 gagtagtgatatatagaccaccttaggtggcatgtaccacttgtatacccacacacaa 4077086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 14314171 - 14314110
Alignment:
Q  225 aatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  14314171 aatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 14314110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 1244735 - 1244680
Alignment:
Q  231 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||||||||||||    
T  1244735 tagtgatacatagaccaccttaagtggcatgtaccacttgtacatccacacacaat 1244680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 9045833 - 9045891
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| |||||||||| |||||||||| |||||||||||    
T  9045833 gagtagtgatacatagaccaccttaggtggcatgtatcacttgtacacccacacacaat 9045891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 34792833 - 34792781
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 280  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||    
T  34792833 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccaca 34792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 9522001 - 9521943
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacaca 284  Q
    ||||||||| |||||||||  |  ||| ||||||||||||||||||||| |||||||||    
T  9522001 atgagtagtaatacatagatcaccttaggtggcatgtaccacttgtacacccacacaca 9521943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 29429590 - 29429642
Alignment:
Q  234 tgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||| ||||||  ||| ||||||||||||||||||||| ||||| |||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaat 29429642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 5817564 - 5817504
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  5817564 atgagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 5817504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 17044001 - 17044061
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  17044001 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 17044061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 37605873 - 37605815
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  37605873 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 37605815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 45996076 - 45996018
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  45996076 gagtagtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaat 45996018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 55281208 - 55281266
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  55281208 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 55281266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 25164652 - 25164595
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  25164652 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 25164595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 39631325 - 39631274
Alignment:
Q  223 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca 274  Q
    ||||||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  39631325 ttaatgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 39631274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 25784090 - 25784036
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 282  Q
    |||||||||||||||||  |  ||| |||||||||||||||||||||||||||||    
T  25784090 gagtagtgatacatagatcatcttaggtggcatgtaccacttgtacatccacaca 25784036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 32525204 - 32525146
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||| |||||||| ||||||||||||||||    
T  32525204 gagtagtgatacatagaccatcttaggtggcatataccacttatacatccacacacaat 32525146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 43749092 - 43749146
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 282  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||    
T  43749092 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacaca 43749146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 20107108 - 20107156
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtaca 274  Q
    |||||||||||||||||||| |  ||| |||||||||||||||||||||    
T  20107108 atgagtagtgatacatagaccaccttaggtggcatgtaccacttgtaca 20107156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 51579323 - 51579378
Alignment:
Q  231 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| ||||| |||||    
T  51579323 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaat 51579378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 48525328 - 48525378
Alignment:
Q  230 gtagtgatacatagactaatttatgtggcatgtaccacttgtacatccaca 280  Q
    ||||||||||||| || | |||| ||||||| |||||||||||||||||||    
T  48525328 gtagtgatacataaaccactttaggtggcatataccacttgtacatccaca 48525378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 32290215 - 32290272
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||| |  ||| |||||||||||||||| |||| ||| |||||||    
T  32290215 agtagtgatacatagaccatcttaggtggcatgtaccacttatacacccatacacaat 32290272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 46576425 - 46576366
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  46576425 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 46576366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 48460658 - 48460717
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  ||| ||||||||||||| ||||||||||||| |||||    
T  48460658 tgagtagtgatacatagaccaccttaggtggcatgtaccatttgtacatccacatacaat 48460717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 31741041 - 31741101
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||| |||||||||||| |  ||| |||||||||||||||| |||| ||| |||||||    
T  31741041 atgagtaatgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaat 31741101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 13988247 - 13988305
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  13988247 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 13988305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 36890377 - 36890435
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  36890377 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 36890435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 11247191 - 11247250
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||||||  |||  |||||| ||| |||||||||||||||||||||    
T  11247191 tgagtagtgatacatagactaccttagatggcatatactacttgtacatccacacacaat 11247250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 50989203 - 50989261
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  50989203 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 50989261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 51092335 - 51092393
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  51092335 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 51092393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Original strand, 23004757 - 23004814
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  23004757 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 23004814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 38247801 - 38247856
Alignment:
Q  231 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  38247801 tagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 38247856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 8330774 - 8330716
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  |||  ||||||||||||||||||||| ||||||||||    
T  8330774 gagtagtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaat 8330716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 9271105 - 9271164
Alignment:
Q  223 ttaatgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 282  Q
    |||| |||||||||||||||||| |  |||  |||||||||||||||||||| |||||||    
T  9271105 ttaaagagtagtgatacatagaccaccttagatggcatgtaccacttgtacacccacaca 9271164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 29915141 - 29915090
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 279  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29915141 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29915090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 29964294 - 29964243
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccac 279  Q
    |||||||||||||||||| |  ||||||||||| ||||||||||||| ||||    
T  29964294 gagtagtgatacatagaccaccttatgtggcatataccacttgtacacccac 29964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 33288136 - 33288190
Alignment:
Q  232 agtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||| |  ||| |||| |||||||||||||||| |||||||||||    
T  33288136 agtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaat 33288190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 12224184 - 12224127
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||| || |  ||| ||||||||||||| ||||||| |||||||||||    
T  12224184 agtagtgatacataaaccaccttaggtggcatgtaccatttgtacacccacacacaat 12224127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 44092574 - 44092518
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 282  Q
    ||||||| |||||||| ||  | |||| ||||||||| |||||||||||||||||||    
T  44092574 atgagtaatgatacattgatcactttaggtggcatgtgccacttgtacatccacaca 44092518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 14945919 - 14945861
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaa 285  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||||||| ||||||||||    
T  14945919 tgagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaa 14945861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 32599430 - 32599376
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacaca 282  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||||||||||||    
T  32599430 gagtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacaca 32599376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 13697146 - 13697089
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||||| |||||||||||    
T  13697146 agtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaat 13697089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 4434772 - 4434717
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacac 283  Q
    ||||||||||| |||||| |  |||||||||||||||||||||||| |||||||||    
T  4434772 gagtagtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacac 4434717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 5562934 - 5562983
Alignment:
Q  226 atgagtagtgatacatagactaatttatgtggcatgtaccacttgtacat 275  Q
    |||||||||||||||||||||| |||| ||||||||||||| || |||||    
T  5562934 atgagtagtgatacatagactattttaggtggcatgtaccatttatacat 5562983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 286
Target Start/End: Complemental strand, 36272840 - 36272785
Alignment:
Q  231 tagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||| |  ||| |||||||||||||||| |||| |||||||||||    
T  36272840 tagtgatacatagaccaccttaggtggcatgtaccacttatacacccacacacaat 36272785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 40095262 - 40095321
Alignment:
Q  227 tgagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||||| |  |||  || ||||||||||||||||||||||| |||||    
T  40095262 tgagtagtgatacatagaccaccttagatgacatgtaccacttgtacatccacatacaat 40095321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 14242697 - 14242639
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    |||||||||||||||||| |  ||| |||| ||||||||| |||||| |||||||||||    
T  14242697 gagtagtgatacatagaccatcttaggtggtatgtaccacctgtacacccacacacaat 14242639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 286
Target Start/End: Complemental strand, 42061412 - 42061355
Alignment:
Q  229 agtagtgatacatagactaatttatgtggcatgtaccacttgtacatccacacacaat 286  Q
    ||||||||||||||||  | |||  ||||||||||||||||||||| ||||| |||||    
T  42061412 agtagtgatacatagagcactttgggtggcatgtaccacttgtacacccacatacaat 42061355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 23860346 - 23860302
Alignment:
Q  228 gagtagtgatacatagactaatttatgtggcatgtaccacttgta 272  Q
    |||||||||||||||||| |  ||| |||||||||||||||||||    
T  23860346 gagtagtgatacatagaccaccttaggtggcatgtaccacttgta 23860302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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