View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15667_high_18 (Length: 269)
Name: NF15667_high_18
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_18 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0009 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 252
Target Start/End: Complemental strand, 10302 - 10108
Alignment:
| Q |
60 |
aaaataatgattccatcaacgatgataaattaatgatgcttgtaagtgaaatattcaatnnnnnnnggcttgaagattgaacaaa-tgcagcccatggta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10302 |
aaaataatgattccatcaacgatgataaattaatgatgcctgtaagtgaaaaattcaataaaaaaaggcttgaagattgaaaaaaatgcagcccatggta |
10203 |
T |
|
| Q |
159 |
aatgatagatatatccttgtgaattttttcattaagttcatgactt-ttttctaaaacaaaggagattaaaatttaatttagcaattcttctctg |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10202 |
aatgatagatatatccttgtgaattttttcattaagttcatgactttttttgtaaaacaaaggagattaaaatttaatttagcaattcttctctg |
10108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 36480734 - 36480963
Alignment:
| Q |
1 |
tgataaagtatcttttaacaaattctgatatgaaaatctgcattgaaaaatatcatgataaaataatgattccatcaacgatgataaattaatgatgctt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| |||||||||| |||||| ||||||||||||||| |||| ||||||| | |||| || |
|
|
| T |
36480734 |
tgataaagtatcttc-aacaaattctgttaggaaaatctacattgaaaaaaatcatggtaaaataatgattccttcaatgatgatacac----gatggtt |
36480828 |
T |
|
| Q |
101 |
gtaagtgaaatattcaatnnnnnnn-ggcttgaagattgaacaaatgcagcccatggtaaatgatagatatatccttgtgaattttttcattaagttcat |
199 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
36480829 |
gtaagtgaaaaattcaataaaaaaatggcttgaagattgaaccaat------------aaaagattgatatatccttgtgaatttt-tcattaagttcat |
36480915 |
T |
|
| Q |
200 |
gacttttttctaaaacaaaggagattaaaatttaatttagcaattctt |
247 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
36480916 |
gactattttgtaaaacaaatgagattaaaatttaaattagcaattctt |
36480963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 6942066 - 6942032
Alignment:
| Q |
16 |
taacaaattctgatatgaaaatctgcattgaaaaa |
50 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
6942066 |
taacaaattctgctatgaaaatctgcattgaaaaa |
6942032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University