View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15667_high_21 (Length: 248)

Name: NF15667_high_21
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15667_high_21
NF15667_high_21
[»] scaffold0009 (1 HSPs)
scaffold0009 (83-229)||(16074-16216)
[»] chr5 (4 HSPs)
chr5 (146-223)||(32108022-32108100)
chr5 (164-223)||(12237028-12237087)
chr5 (145-204)||(37122583-37122642)
chr5 (145-204)||(29166481-29166540)
[»] chr1 (3 HSPs)
chr1 (146-223)||(328498-328571)
chr1 (173-223)||(7010059-7010109)
chr1 (146-223)||(35377601-35377678)
[»] chr3 (3 HSPs)
chr3 (146-223)||(42313986-42314059)
chr3 (146-188)||(29217645-29217687)
chr3 (146-223)||(29690011-29690088)
[»] chr7 (3 HSPs)
chr7 (146-221)||(13141522-13141596)
chr7 (45-105)||(36480435-36480495)
chr7 (190-223)||(49124375-49124408)
[»] chr8 (2 HSPs)
chr8 (146-223)||(13101610-13101687)
chr8 (145-185)||(9048440-9048480)
[»] chr4 (3 HSPs)
chr4 (148-220)||(10097021-10097093)
chr4 (151-204)||(9739569-9739622)
chr4 (147-216)||(31919872-31919941)
[»] chr6 (1 HSPs)
chr6 (145-194)||(29643603-29643652)
[»] chr2 (1 HSPs)
chr2 (146-186)||(30977495-30977535)


Alignment Details
Target: scaffold0009 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 229
Target Start/End: Original strand, 16074 - 16216
Alignment:
Q  83 tatttgcaatccgtacacacccttcacatttaaaaagatgggtgtatttgnnnnnnnnnnngaagtaataaatacatttagaaatttgtcgatagtctta 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||            |||||||||||||||||| |||||||| ||||||||||    
T  16074 tatttgcaatccgtacacacccttcacattgaaaaagatgggtgtatttgaaaaaaaa----aagtaataaatacatttaaaaatttgtagatagtctta 16169  T
Q  183 tatttaaggacaaaacttttttgtaaagtagtcttataaaagagacg 229  Q
    ||||||||||||||  |||||||| |||||||| |||||||||||||    
T  16170 tatttaaggacaaattttttttgtcaagtagtcctataaaagagacg 16216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 32108100 - 32108022
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaactt-ttttgtaaagtagtcttataaaa 223  Q
    |||||||| | |||||| |||||||| | || ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  32108100 agtaataattgcatttaaaaatttgtagctaatcttatatttagggacaaaactttttttgtaaagtagtcttataaaa 32108022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 12237087 - 12237028
Alignment:
Q  164 aaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||| | |||| |||||||||||| |||||||||||||| |||||||||||| |||||    
T  12237087 aaatttatagataatcttatatttaacgacaaaacttttttataaagtagtcttgtaaaa 12237028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 37122642 - 37122583
Alignment:
Q  145 aagtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaactttttt 204  Q
    ||||||||||| ||| |||||||| ||||||||||||||||||| |||||  ||||||||    
T  37122642 aagtaataaatgcatgtagaaattcgtcgatagtcttatatttagggacatgactttttt 37122583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 29166481 - 29166540
Alignment:
Q  145 aagtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaactttttt 204  Q
    |||||||||| |||| || |||||||| |||| |||||||||||| ||||| ||||||||    
T  29166481 aagtaataaacacatctaaaaatttgtagataatcttatatttaaagacaacactttttt 29166540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 328498 - 328571
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||||||| | | |||||||||| ||||||||||||||||| ||||||    ||||||||||||||||||||||||    
T  328498 agtaataaatgcgtctagaaatttgacgatagtcttatatttacggacaa----tttttgtaaagtagtcttataaaa 328571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 7010109 - 7010059
Alignment:
Q  173 gatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||||||||||||| ||||| || |||||||||||||||||| ||||||    
T  7010109 gatagtcttatatttatggacacaatttttttgtaaagtagtctcataaaa 7010059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 35377601 - 35377678
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||| ||| ||| || ||||||||  ||| |||||||| ||||||||||||||||| || || || ||||||||||    
T  35377601 agtaatcaatgcatctaaaaatttgtatataatcttatatctaaggacaaaactttttcgtcaactactcttataaaa 35377678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 42314059 - 42313986
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||||||| | | |||||||||| ||||||||||||||||| ||||||     |||||||||||||||||||||||    
T  42314059 agtaataaatgcgtctagaaatttgacgatagtcttatatttacggacaa----cttttgtaaagtagtcttataaaa 42313986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 29217645 - 29217687
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatattta 188  Q
    |||||||||||||| ||||||||||| ||||||||||||||||    
T  29217645 agtaataaatacatctagaaatttgtagatagtcttatattta 29217687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 29690011 - 29690088
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    ||||| |||| ||| |||||||| || ||| |||||||||||||  | ||   |||||||||||||||||||||||||    
T  29690011 agtaacaaatgcatctagaaattggtagatggtcttatatttaacaataatttttttttgtaaagtagtcttataaaa 29690088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 13141522 - 13141596
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataa 221  Q
    |||||||||| |||||| |||||| |||||| | |||||||||||||||||  ||||||  |||||||||||||||    
T  13141522 agtaataaatgcatttaaaaatttatcgataat-ttatatttaaggacaaatatttttttaaaagtagtcttataa 13141596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 36480495 - 36480435
Alignment:
Q  45 tatcaattgtaaatcaaatctatgataccgtttacatatatttgcaatccgtacacaccct 105  Q
    |||||| |||||||||||| ||| ||||| ||| |||||||||||| || |||||||||||    
T  36480495 tatcaactgtaaatcaaatttatcataccctttccatatatttgcattcggtacacaccct 36480435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 49124408 - 49124375
Alignment:
Q  190 ggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    ||||||||||||||||||||||| ||||||||||    
T  49124408 ggacaaaacttttttgtaaagtaatcttataaaa 49124375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 13101687 - 13101610
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttataaaa 223  Q
    |||||||||||||| || ||||||||  ||| | |||||| ||  |||||||| ||||||| ||||||||||||||||    
T  13101687 agtaataaatacatctaaaaatttgtaaataattttatatgtagagacaaaacatttttgttaagtagtcttataaaa 13101610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 9048440 - 9048480
Alignment:
Q  145 aagtaataaatacatttagaaatttgtcgatagtcttatat 185  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  9048440 aagtaataaatacatctaaaaatttgtagatagtcttatat 9048480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 220
Target Start/End: Complemental strand, 10097093 - 10097021
Alignment:
Q  148 taataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtcttata 220  Q
    |||||||| |||||||||||||||  |||||||| ||||||  |||||   ||||||||||| ||||||||||    
T  10097093 taataaatgcatttagaaatttgtaaatagtcttctatttagagacaatttttttttgtaaaatagtcttata 10097021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 9739622 - 9739569
Alignment:
Q  151 taaatacatttagaaatttgtcgatagtcttatatttaaggacaaaactttttt 204  Q
    ||||| ||| ||| ||||||| |||||| |||||||||| ||||||||||||||    
T  9739622 taaattcatctaggaatttgtagatagtattatatttaaagacaaaactttttt 9739569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 31919872 - 31919941
Alignment:
Q  147 gtaataaatacatttagaaatttgtcgatagtcttatatttaaggacaaaacttttttgtaaagtagtct 216  Q
    ||||||||| ||| || ||||||||| ||||||||||||||| ||||||   ||||| ||||| ||||||    
T  31919872 gtaataaatgcatctaaaaatttgtctatagtcttatatttagggacaattttttttggtaaaatagtct 31919941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 29643652 - 29643603
Alignment:
Q  145 aagtaataaatacatttagaaatttgtcgatagtcttatatttaaggaca 194  Q
    ||||||||||||||| || |||| ||| ||||||||||||||||| ||||    
T  29643652 aagtaataaatacatctaaaaatgtgttgatagtcttatatttaaagaca 29643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 30977535 - 30977495
Alignment:
Q  146 agtaataaatacatttagaaatttgtcgatagtcttatatt 186  Q
    |||||||||||||| ||||||||||| |||| |||||||||    
T  30977535 agtaataaatacatctagaaatttgtagataatcttatatt 30977495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University