View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15667_high_4 (Length: 621)
Name: NF15667_high_4
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Original strand, 6960264 - 6960868
Alignment:
| Q |
1 |
tcagaagttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6960264 |
tcagaagttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccag |
6960363 |
T |
|
| Q |
101 |
aagcagtattttccaagcgtcttctgtcaaggctacgccgtttgaagaaaatccaccacagatatcaccatatggtacatattcatatttatttattaga |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6960364 |
aagcagtgttttccaagcgtcttctgtcaaggctacgccgtttgaagaaaatccaccacagatatcaccatatggtacatatttatatttatttattaga |
6960463 |
T |
|
| Q |
201 |
aacaaaatgattttaattagaatttgtatttggtagataatccatctggttttccatattgtttctgttgtttaattgtttctgtttgatgttcatatgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6960464 |
aacaaaatgattttaattagaatttgtatttggtagataatccatctggttttccatattgtttctgttgtttaattgtttgtgtttgatgttcatatgt |
6960563 |
T |
|
| Q |
301 |
tacaggacacattcttgggggaaattctaggtgctgttgtcctagctaatggtcattcaagtcttctagatgcaaaatttgagttaaaatctgtgaaagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6960564 |
tacaggacacattcttgggggaaattctaggtgctgttgtcctagctaatggtcattcaagtcttctagatgcaaaatttgagttaaaatctgtgaaact |
6960663 |
T |
|
| Q |
401 |
cctagcagaagggattgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaagacatgttgatgccaagacttat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6960664 |
cctagcagaagggattgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaagacatgttgatgccaagacttat |
6960763 |
T |
|
| Q |
501 |
catgaaatatatgcaaagaggctaggtgatccgaaccaatcagctaaagtaggaagcttcaaagaacagaagagaaaatggagtcatccacatgatagaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6960764 |
catgaaatatatgcaaagaggctaggtgatccgaaccaatcagctaaagtaggaagcttcaaagaacagaagaggaaatggagtcatccacatgatagaa |
6960863 |
T |
|
| Q |
601 |
gttta |
605 |
Q |
| |
|
||||| |
|
|
| T |
6960864 |
gttta |
6960868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 278 - 603
Target Start/End: Original strand, 6967936 - 6968261
Alignment:
| Q |
278 |
gtttctgtttgatgttcatatgttacaggacacattcttgggggaaattctaggtgctgttgtcctagctaatggtcattcaagtcttctagatgcaaaa |
377 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967936 |
gtttgtgtttgatgttcatatgttacaggacacattcttgggggaaattctaggtgccgttgtcctagctaatggtcattcaagtcttctagatgcaaaa |
6968035 |
T |
|
| Q |
378 |
tttgagttaaaatctgtgaaagtcctagcagaagggattgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaa |
477 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968036 |
tttgagttaaaatctgtgaaactcctagcagaagggattgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaa |
6968135 |
T |
|
| Q |
478 |
gacatgttgatgccaagacttatcatgaaatatatgcaaagaggctaggtgatccgaaccaatcagctaaagtaggaagcttcaaagaacagaagagaaa |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6968136 |
gacatgttgatgccaagacttatcatgaaatatatgcaaagaggctaggtgatccgaaccaatcagctaaagtaggaagcttcaaagaacagaagaggaa |
6968235 |
T |
|
| Q |
578 |
atggagtcatccacatgatagaagtt |
603 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
6968236 |
atggagtcatccacgtgatagaagtt |
6968261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 4 - 188
Target Start/End: Original strand, 6967697 - 6967881
Alignment:
| Q |
4 |
gaagttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaag |
103 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| | |||||||||||||||| |
|
|
| T |
6967697 |
gaagttaacatcacattcattccactcagtatccagcaaaaagcaagttcattttcaagtactttaagatggctcagtcaaatagaaaaaacaccagaaa |
6967796 |
T |
|
| Q |
104 |
cagtattttccaagcgtcttctgtcaaggctacgccgtttgaagaaaatccaccacagatatcaccatatggtacatattcatat |
188 |
Q |
| |
|
|||| |||||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| || ||||||| |
|
|
| T |
6967797 |
cagtgttttccaaacgtattctgtcaaggctacgccgtctgaagaaaatccaccatagatatcaacatatggtatatgttcatat |
6967881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 181032 - 180924
Alignment:
| Q |
1 |
tcagaagttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccag |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| |||| |
|
|
| T |
181032 |
tcagaagttaacatcacactcgttccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggctcagtagaacagaaaaaactccag |
180933 |
T |
|
| Q |
101 |
aagcagtat |
109 |
Q |
| |
|
||||||||| |
|
|
| T |
180932 |
aagcagtat |
180924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 318 - 481
Target Start/End: Original strand, 48560156 - 48560316
Alignment:
| Q |
318 |
ggggaaattctaggtgctgttgtcctagctaatggtcattcaagtcttctagatgcaaaatttgagt-taaaatctgtgaaagtcctagcagaagggatt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||| | |||||||| || |
|
|
| T |
48560156 |
ggggaaattctaggtgctgttgtcctagctaatggtg--tgaatg--tctagatgcaaaatttgagtctaaaatctgtgaaagttttggcagaaggagtt |
48560251 |
T |
|
| Q |
417 |
gaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaagaca |
481 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
48560252 |
gaatctaccgatggaaaaatgggcgtggatgagaaatatgagaatttagtgagaattttaagaca |
48560316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 21744908 - 21745009
Alignment:
| Q |
8 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
21744908 |
ttaacatcccactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
21745007 |
T |
|
| Q |
108 |
at |
109 |
Q |
| |
|
|| |
|
|
| T |
21745008 |
at |
21745009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 42740762 - 42740863
Alignment:
| Q |
8 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
42740762 |
ttaacatcacactcattccactcggtatccagcataaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
42740861 |
T |
|
| Q |
108 |
at |
109 |
Q |
| |
|
|| |
|
|
| T |
42740862 |
at |
42740863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 559
Target Start/End: Complemental strand, 49100200 - 49100055
Alignment:
| Q |
414 |
attgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaagacatgttgatgccaagacttatcatgaaatatatg |
513 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||| ||||||| ||||| |||| ||||| |||| || | ||| ||||| || | | |||| |
|
|
| T |
49100200 |
attgaatcaactgacggaaaaatggtggtggatgagaaaaatggaaagttagtccgaatattaagcaatgtggaggaaaaggcttattataatttgtatg |
49100101 |
T |
|
| Q |
514 |
caaagaggctaggtgatccgaaccaatcagctaaagtaggaagctt |
559 |
Q |
| |
|
|||| | ||| ||||||| | | || |||||||| ||||||||||| |
|
|
| T |
49100100 |
caaacaagcttggtgatcagtatcagtcagctaaggtaggaagctt |
49100055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 478
Target Start/End: Complemental strand, 49112016 - 49111952
Alignment:
| Q |
414 |
attgaatctactgatggaaaaatggtggtggatgagaaatatggaaaattagtgagaattttaag |
478 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||| ||||||| ||||| ||||| ||||| |
|
|
| T |
49112016 |
attgaatccactgatggaaaaatagtggtagatgagaaacatggaaagttagtcagaatattaag |
49111952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 177
Target Start/End: Complemental strand, 49100541 - 49100454
Alignment:
| Q |
90 |
aaaaacaccagaagcagtattttccaagcgtcttctgtcaaggctacgccgtttgaagaaaatccaccacagatatcaccatatggta |
177 |
Q |
| |
|
|||||||||||| | | ||||||||||||||| ||||||| ||| || ||||||| |||| || |||||||||||||||||||| |
|
|
| T |
49100541 |
aaaaacaccagaggttgcattttccaagcgtctgttgtcaagcctataccatttgaagcaaattcatgacagatatcaccatatggta |
49100454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 4302117 - 4302202
Alignment:
| Q |
90 |
aaaaacaccagaagcagtattttccaagcgtcttctgtcaaggctacgccgtttgaagaaaatccaccacagatatcaccatatgg |
175 |
Q |
| |
|
|||||||||||| | ||||||||||||||| | ||||||| |||| || ||||||| |||| || |||||||||||||||||| |
|
|
| T |
4302117 |
aaaaacaccagacgatgtattttccaagcgtttgttgtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatgg |
4302202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 459
Target Start/End: Original strand, 4302656 - 4302692
Alignment:
| Q |
423 |
actgatggaaaaatggtggtggatgagaaatatggaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4302656 |
actgatggaaaaatggtggtggatgagaaacatggaa |
4302692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University