View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15667_high_5 (Length: 604)
Name: NF15667_high_5
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 6 - 587
Target Start/End: Complemental strand, 33819351 - 33818768
Alignment:
| Q |
6 |
agtgagatgaaatggatgcgagattagcatgcaacgtgacgtgttcagttaatatgtcatatcataacttctaaattctaacgaggacaacttttgatta |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
33819351 |
agtgagttgaaatggatgcgagattagcatgcaacgagacgtgttcagttaatatgtcatatcataacttctaagttctaacgaggataacttttgatca |
33819252 |
T |
|
| Q |
106 |
atattttacgttttcaaatatatcttttataatatttttgaatgatatcttacaatttcaaaaaatgtgtatcttaatttgcaaaaataagagactattt |
205 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33819251 |
atgttttacgttttcaaatatgtcttttataat---tttgaatgatatcttacaatttcaaaaaatgtgtatcttaatttgcaataataagatactattt |
33819155 |
T |
|
| Q |
206 |
cgacaaatatttacaatttagaggatcgattttccccactctattaacagtggttctgataacaaaaatgaaatatgattagacttctatata--tacat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33819154 |
cgacaaatatttacaatttagaggatcgattttccccactctattaatagtggttctgataacaaaaatgaaatatgattagacttctatatatttacat |
33819055 |
T |
|
| Q |
304 |
aggcctaaagttatgaaactcataaaagaatgagtagcattaatggagaaagaat--aatacatcttataataaaatatttcctgtcacataagatgtga |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33819054 |
aggcctaaagttatgaaactcataaaagaatgagtaacattaatggagaaagaataaaatacatcttataataaaatatttcctgtcacataagatgtga |
33818955 |
T |
|
| Q |
402 |
tgctaatgaagattgttgaacaagctctcaaatttctatcacaaattccatttccaaattccacacaaagtaacattatacc-tgataccatattaatca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33818954 |
tgctaatgaagattgttgaacaagctctcaaatttctatcacaaattccatttccaaattccacacaaagtaacattataccttgataccatattaatca |
33818855 |
T |
|
| Q |
501 |
ccaatcactataaaacagaataaagctaagaatatatcaaaaagcataaacttttcaatctacatatctatctctatctatgactat |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33818854 |
ccaatcactataaaacagaataaagctaagaatatatcaaaaagcataaacttttgaatctacatatctatctctatctatgactat |
33818768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University