View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_low_21 (Length: 257)
Name: NF15667_low_21
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 2540581 - 2540800
Alignment:
| Q |
17 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
116 |
Q |
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| T |
2540581 |
agcagagatgtcaacactggttataccagtaggaaaaacatttatggtgtcgaaactaagttttaacggtccttgcaccaacaaacatattcttattcag |
2540680 |
T |
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| Q |
117 |
gtatttagtatatctaacgttcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgcggcttttaaaatatttaaagaaat |
216 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
2540681 |
gtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcat-tgtataagttttaattgcggcttttaaaatgattaaagaaat |
2540779 |
T |
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| Q |
217 |
tatatttgttttgtatttttg |
237 |
Q |
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||||||||||||||||||||| |
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| T |
2540780 |
tatatttgttttgtatttttg |
2540800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 2531245 - 2531477
Alignment:
| Q |
17 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
116 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531245 |
agcagagatgtcaacactggtcatacccgtaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
2531344 |
T |
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| Q |
117 |
gtatttagtatatctaacgttcacttttaagacctagtacaataaacttataatcatatgtataag------------ttttaattgcggcttttaaaat |
204 |
Q |
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| T |
2531345 |
gtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgtatttttaattgcggcttttaaaat |
2531444 |
T |
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| Q |
205 |
atttaaagaaattatatttgttttgtatttttg |
237 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2531445 |
atttaaagaaattatatttgttttgtatttttg |
2531477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 1827848 - 1827912
Alignment:
| Q |
23 |
gatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
87 |
Q |
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| T |
1827848 |
gatgtcaacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1827912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 1862293 - 1862357
Alignment:
| Q |
23 |
gatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
87 |
Q |
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|||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
1862293 |
gatgtcaacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1862357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 2562429 - 2562505
Alignment:
| Q |
17 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgca |
93 |
Q |
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||||| |||||||||||| | |||||||| ||||||| || |||||||||||| || |||||| |||||||||| |
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| T |
2562429 |
agcagggatgtcaacactaataataccagctggaaaaaaatacatggtgtcgaaagcaaattttagtggtccttgca |
2562505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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