View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_low_3 (Length: 917)
Name: NF15667_low_3
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 737; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 18 - 903
Target Start/End: Complemental strand, 6488723 - 6487825
Alignment:
| Q |
18 |
ttactttaatattgaaaactatatattttgaggcaaaccacaatggagtaaaagaaagttaccttttgctaaatgtgatattagaaagtgaagacgttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488723 |
ttactttaatattgaaaactatatattttgaggcaaaccacaatggagtaaaagaaagttaccttttgctaaatgtgatattagaaagtgaagacgttta |
6488624 |
T |
|
| Q |
118 |
ccttccaagctagctatgcatttctcgatttaactagttatatattctggatcttctttactctgccggccatttctagtaacatttaactttaccctaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488623 |
ccttccaagctagctatgcatttctcgatttaactagttatatattctgaatcttctttactctgccggccatttctagtaacatttaactttaccctaa |
6488524 |
T |
|
| Q |
218 |
gatgcaagcttgtggtattggtcatcatactgttagcccactttatgaagaccaatcaagcattaaattcttaaaataaaaaataaacatatgatatggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488523 |
gatgcaagcttgtggtattggtcatcatactgttagcccactttatgaagaccaatcaagcattaaattcttaaaataaaaaataaacatatgatatggt |
6488424 |
T |
|
| Q |
318 |
tatatagtatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488423 |
tatatagtatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactgg |
6488324 |
T |
|
| Q |
418 |
aaacgtgacttcttgccaaagttttggcctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatataataaaccat----- |
512 |
Q |
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| T |
6488323 |
aaacgtgacttcttgccaaagttttggcctgatgtgaaaatggcactgcatagttaaatataggcgcagtcatgttacataatgtaataaaccatacact |
6488224 |
T |
|
| Q |
513 |
-------ttttacattgattagaaatcgacactaagcgtagtttataaac-acattcacactcttcaatccaacaagatatcttttagaaagaatgaaat |
604 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||| ||||||||||||||| ||||| |
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| T |
6488223 |
aagatagttttacattggttagaaatcgacactaagcgtagtttataaacaacattcatactcttcaattcaacgagacatcttttagaaagaacgaaat |
6488124 |
T |
|
| Q |
605 |
gataaaaactcacacaaggttcaaagcgcacaatactt-aaaaaatgcactctagtgttgtgaagttgaggtcggaacttttgcgctagaatgcactcta |
703 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6488123 |
gataaaaactcacacaaggttcaaaacgcacaatacttaaaaaaatgcactctagtgttgtaaagttgaggtcggaacttttgcgctagaatgcactcta |
6488024 |
T |
|
| Q |
704 |
gtgttgtggagttaacctcgacgggaggggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataagcaaca |
803 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6488023 |
gtgttgtggag-taacctcgacgggaggggtctattgtggtacacttaaatagttcaatcttgcttgagaatcgaatctaattatagtttataaacaaca |
6487925 |
T |
|
| Q |
804 |
tacactcatcattcaaacaaggctaatgtttcattgacactcnnnnnnnnccatatacacaatatacca--ccccatgtgagcgtgtgtgagagacaaaa |
901 |
Q |
| |
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||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
6487924 |
tacactcatcaatcaaacaaggataatgtttcactgacactc--ttttttccatatacacaatataccatcccccatatgagcgtgtgtgagagacaaaa |
6487827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 322 - 463
Target Start/End: Original strand, 8382229 - 8382370
Alignment:
| Q |
322 |
tagtatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactatttgtagtttcactggaaac |
421 |
Q |
| |
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||||||||||||||||||| | ||| |||||| |||| || |||| ||||||||||||| |||||| | | |||| ||||| |||| ||||||| |||| |
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| T |
8382229 |
tagtatgtgtttggtttagagttttccaatggctgccgcacgttttgaagcctttttgccgtgattcggaaaagctactatacgtagcttcactgcaaac |
8382328 |
T |
|
| Q |
422 |
gtgacttcttgccaaagttttggcctgatgtgaaaatggcac |
463 |
Q |
| |
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|||| ||| |||| ||||||| ||||||| ||||||||| |
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| T |
8382329 |
gtgagttcctgccgtgattttggcttgatgtggaaatggcac |
8382370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 325 - 462
Target Start/End: Original strand, 31834820 - 31834959
Alignment:
| Q |
325 |
tatgtgtttggtttagggatttgcaatggttgccacatgtttggaagcctttttgcagtgatttgaagaagccactattt--gtagtttcactggaaacg |
422 |
Q |
| |
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|||||||||||||||| | ||||||||| || |||| |||| ||| ||||| | | |||||||||| |||| ||||| | |||| |||| |||||||| |
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| T |
31834820 |
tatgtgtttggtttagagttttgcaatgactgacacacgttttgaaacctttgttccgtgatttgaaaaagctactatatatgtagcttcattggaaacg |
31834919 |
T |
|
| Q |
423 |
tgacttcttgccaaagttttggcctgatgtgaaaatggca |
462 |
Q |
| |
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||| |||||| | |||||| |||||||||||||||||| |
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| T |
31834920 |
tgagttcttgtcgtggttttgacctgatgtgaaaatggca |
31834959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 460
Target Start/End: Original strand, 42351740 - 42351823
Alignment:
| Q |
377 |
ttgcagtgatttgaagaagccactatttgtagtttcactggaaacgtgacttcttgccaaagttttggcctgatgtgaaaatgg |
460 |
Q |
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|||| |||||||||| |||| ||||| ||||| ||||||| |||||||| ||| |||| ||||||| |||||||||||||| |
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| T |
42351740 |
ttgccgtgatttgaaaaagcaactatatgtagcttcactgcaaacgtgaattcctgccgtgattttggcttgatgtgaaaatgg |
42351823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 866 - 904
Target Start/End: Original strand, 5749069 - 5749107
Alignment:
| Q |
866 |
tataccaccccatgtgagcgtgtgtgagagacaaaaaat |
904 |
Q |
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|||||||||||||||||| ||||||||||||||| |||| |
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| T |
5749069 |
tataccaccccatgtgagagtgtgtgagagacaataaat |
5749107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 866 - 904
Target Start/End: Original strand, 38754937 - 38754975
Alignment:
| Q |
866 |
tataccaccccatgtgagcgtgtgtgagagacaaaaaat |
904 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||| |
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| T |
38754937 |
tataccaccccatgtgagagtgtgtgagagacaataaat |
38754975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 854 - 899
Target Start/End: Complemental strand, 33496653 - 33496608
Alignment:
| Q |
854 |
ccatatacacaatataccaccccatgtgagcgtgtgtgagagacaa |
899 |
Q |
| |
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||||| ||||| |||||||| ||||||||| ||||||||||||||| |
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| T |
33496653 |
ccatacacacattataccactccatgtgagagtgtgtgagagacaa |
33496608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 866 - 904
Target Start/End: Complemental strand, 20151516 - 20151478
Alignment:
| Q |
866 |
tataccaccccatgtgagcgtgtgtgagagacaaaaaat |
904 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
20151516 |
tataccaccccatgtgagagtgtgtgagagacaataaat |
20151478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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