View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15667_low_6 (Length: 469)

Name: NF15667_low_6
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15667_low_6
NF15667_low_6
[»] chr3 (1 HSPs)
chr3 (1-469)||(46184047-46184509)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 46184047 - 46184509
Alignment:
Q  1 ttacttacctgtccaccataagtttaataattaagcttagatttgcataaacaataatactatagcaaagaaatggaagaaatgaaatcagtatcaataa 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46184047 ttacttacctgtccaccataaatttaataattaagcttagatttgcataaacaataatactatagcaaagaaatggaagaaatgaaatcagtatcattaa 46184146  T
Q  101 ttaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgaggagattgtaattgaaaaatttgattagttgtggct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46184147 ttaataaatccaattcaacctatcgtaggtatggagaggtgttgggcaaatatctaaattccgaggagattgtaattgaaaaatttgattagttgtggcc 46184246  T
Q  201 gaaaagtggaggaatttgagattatatgtgcaactgtactgcatactgcatctgtcaaatgataaacaaattaaagtggcaaagaatgcagagaattggt 300  Q
    |||||||||| |||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46184247 gaaaagtggacgaatttgagattatatgtgcaaatg-------tactgcatctgtcaaatgataaacaaattaaagtggcaaagaatgcagagaattggt 46184339  T
Q  301 tgaatagtaactgggaatgacaattgagc-tagagcagaattttgacagcagaagaaagcacatcggctcctaatttgaggctgttcctgtcagcattgt 399  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  46184340 tgaatagtaactgggaatgacaattgagcttagagcagaattttgacagcagaagaaagcacatcaactcctaatttgaggctgttcctgtcagcattgt 46184439  T
Q  400 gcctgcagcagctcggatgacaacattgcatggcagtagccggatccataggcggggttcttggttagat 469  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46184440 gcctgcagcagctgggatgacaacattacatggcagtagccggatccataggcggggttcttggttagat 46184509  T

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