View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_low_7 (Length: 457)
Name: NF15667_low_7
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_low_7 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 231 - 457
Target Start/End: Complemental strand, 4011078 - 4010852
Alignment:
| Q |
231 |
gtactttgaggaattaggctctgatttctgatcagtcataccttggattcactaacacaagaatgacttgattgtgattatgtgtatttaatttgggcca |
330 |
Q |
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| T |
4011078 |
gtactttgaggaattaggctctgatttccgaccagtcataccttggatttactaaaaaaagaatgtcttgattgtgattatgtgtatttaatttgggcca |
4010979 |
T |
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| Q |
331 |
atgtagtctataaattagtaatggtttgttgacaacttctataaacgaaacatgcaggcaacaacacatttttaacccttgatcctactaaggaggaagg |
430 |
Q |
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| T |
4010978 |
atgtagtctataaattagtaatggtttgttgacaacttctatagacaaaacatgcaggcaacaacacatttttaacccttgatactactaaggaggaagg |
4010879 |
T |
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| Q |
431 |
aaaagagaaagaaaaagaaatgtttta |
457 |
Q |
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| T |
4010878 |
aaaagagaaagaaaaagaaatgtttta |
4010852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 4011346 - 4011155
Alignment:
| Q |
40 |
cttagtttttgttgttgttcttgtactagagtgcatgctcaaatagtagttaatgctactgtaggtgtgagtcctagaaccgatgtttttcatttgaact |
139 |
Q |
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| T |
4011346 |
cttagttattgttgttcttgttgttctagactgcatgctcaaatagtagttaatgctactgtaggtgtgagccctagagccaatctttttcatttgaact |
4011247 |
T |
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| Q |
140 |
tagaatttgtatcatgttatttatctataacatgaggcattaagttattatgaccgttcacaaggatccttggaagggaaattttatttccg |
231 |
Q |
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| T |
4011246 |
tagaatttatatcatgttatttatctatagcatgaggcattaagttattatgaccgttcacaaggatccttggaagggaaattttatttccg |
4011155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 3953855 - 3953934
Alignment:
| Q |
356 |
ttgttgacaacttctataaacgaaacatgcaggcaacaacacatttttaacccttgatcctactaaggaggaaggaaaag |
435 |
Q |
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| T |
3953855 |
ttgttgaaagcttctatagacgaaaaatgtaggcaacatcaaactttgaacccgtgatcctactaaggaggaagggaaag |
3953934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 4025935 - 4025853
Alignment:
| Q |
354 |
gtttgttgacaacttctataaacgaaacatgcaggcaacaacacatttttaacccttgatcctactaaggaggaaggaaaaga |
436 |
Q |
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| T |
4025935 |
gtttgttggcagcttctatagacgaaagatgtaggacacatcacatttttagtccttgatcttactaaggaggaagggaaaga |
4025853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 13398625 - 13398572
Alignment:
| Q |
287 |
acaagaatgacttgattgtgattat-gtgtatttaatttgggccaatgtagtct |
339 |
Q |
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| T |
13398625 |
acaaaaatggcttgattgtgattattgtggttttaatttgggccaatgtagtct |
13398572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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