View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15667_low_9 (Length: 423)
Name: NF15667_low_9
Description: NF15667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15667_low_9 |
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| [»] scaffold0093 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 46 - 412
Target Start/End: Original strand, 3202231 - 3202597
Alignment:
| Q |
46 |
atatctttataccactggcattgttttatcgaaatcctcattcatgtagattacaagagtttaaacagattggtggacacaaaatgtaaattatcataaa |
145 |
Q |
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|||||||||||||||||| |||||||||||| || |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202231 |
atatctttataccactggtattgttttatcggtatactcattgatgtaaattacaaaagtttaaacagattggtggacacaaaatgtaaattatcataaa |
3202330 |
T |
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| Q |
146 |
gcataatctaattaatgagttgtgatattccattgcaggattgaaagatgggtcaagcattaggatgcgttcaagttgatcagtccaatgttgctatcaa |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202331 |
gcataatctaattaatgagttgtgatattccattgcaggattgaaagatgggtcaagcattaggatgcgttcaagttgatcagtccaatgttgctatcaa |
3202430 |
T |
|
| Q |
246 |
agagcactttggaaaattcgctgatgttttggaacctggatgtcattgtctgccttggtgtcttggttaccagattgctggtggattatcgcttcgtgtt |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202431 |
agagcactttggaaaattcgctgatgttttggaacctggatgtcattgtctgccttggtgtcttggttaccagattgctggtggattatcgcttcgtgtt |
3202530 |
T |
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| Q |
346 |
cagcaacttgatgttaaatgcgagacgaaaactaaggtcctttcattcttcctattttttcgcctat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3202531 |
cagcaacttgatgttaaatgcgagacgaaaactaaggtcgtttcattcttcctattttttcgcctat |
3202597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 83 - 331
Target Start/End: Complemental strand, 7849766 - 7849517
Alignment:
| Q |
83 |
tcattcatgtagattacaagagtttaaacagattggtggacacaaaatgtaaattatcataaagcataatctaattaatgagttgtgatattccattgca |
182 |
Q |
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|||| |||||| ||| ||| |||||||||| |||| |||| ||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
7849766 |
tcatccatgtaaattccaaaagtttaaacatattgatggatgcaaaatgtaaattattataaagtataatctaattaatgagtagtgatattccactgca |
7849667 |
T |
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| Q |
183 |
ggattgaaagatgggtcaagcattaggatgcgttcaagttgatcagtccaatgttgctatcaaagagcactttggaaaattcgctgatgttttggaacct |
282 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||||||| |
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| T |
7849666 |
ggattgaaagatgggtcaagcactaggatgcgttcaagttgatcagtccaatgttgttatcaaagagcactttgg-aaatttgccgatattttggaacct |
7849568 |
T |
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| Q |
283 |
ggatgtcattgtctgccttgg--tgtcttggttaccagattgctggtggat |
331 |
Q |
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| T |
7849567 |
ggatgccattgtttgccttggattgtcttagttaccagattgctggtggat |
7849517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 384
Target Start/End: Original strand, 44873 - 45069
Alignment:
| Q |
187 |
tgaaagatgggtcaagcattaggatgcgttcaagttgatcagtccaatgttgctatcaaagagcactttggaaaattcgctgatgttttggaacctggat |
286 |
Q |
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| T |
44873 |
tgaaagatgagtcaggcactaggatgcgttcaagttgatcagtccaatgttgctatcaaagagcactttggaaattt-gccgatattttggaacctggat |
44971 |
T |
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| Q |
287 |
gtcattgtctgccttggtgtcttggttaccagattgctggtggattatcgcttcgtgttcagcaacttgatgttaaatgcgagacgaaaactaaggtc |
384 |
Q |
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| T |
44972 |
gccattgtttgccttggtgtcttggttaccagattgctggtggattgtcgcttcgtgtccagcaacttgatgtgaaatgcgaaacaaaaaccaaggtc |
45069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 44781 - 44853
Alignment:
| Q |
83 |
tcattcatgtagattacaagagtttaaacagattggtggacacaaaatgtaaattatcataaagcataatcta |
155 |
Q |
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|||| |||||| ||| ||| |||||||||| |||| |||| ||||||||||||||| |||||| |||||||| |
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| T |
44781 |
tcatccatgtaaattccaaaagtttaaacatattgatggatgcaaaatgtaaattattataaagtataatcta |
44853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 187 - 384
Target Start/End: Original strand, 26853128 - 26853324
Alignment:
| Q |
187 |
tgaaagatgggtcaagcattaggatgcgttcaagttgatcagtccaatgttgctatcaaagagcactttggaaaattcgctgatgttttggaacctggat |
286 |
Q |
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| T |
26853128 |
tgaaagatgagtcaggcactaggatgcgttcaagttgatcagtccaatgttgctatcaaagagcactttggtaattt-gccgatattttggaacctggat |
26853226 |
T |
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| Q |
287 |
gtcattgtctgccttggtgtcttggttaccagattgctggtggattatcgcttcgtgttcagcaacttgatgttaaatgcgagacgaaaactaaggtc |
384 |
Q |
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| T |
26853227 |
gccattgtttgccttggtgtcttggttaccagattgctggtggattgtcgcttcgtgtccagcaacttgatgtgaaatgcgaaacaaaaaccaaggtc |
26853324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 26853036 - 26853108
Alignment:
| Q |
83 |
tcattcatgtagattacaagagtttaaacagattggtggacacaaaatgtaaattatcataaagcataatcta |
155 |
Q |
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|||| |||||| ||| ||| |||||||||| |||| |||| ||||||||||||||| |||||| |||||||| |
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| T |
26853036 |
tcatccatgtaaattccaaaagtttaaacatattgatggatgcaaaatgtaaattattataaagtataatcta |
26853108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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