View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15668_high_1 (Length: 721)

Name: NF15668_high_1
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15668_high_1
NF15668_high_1
[»] chr3 (10 HSPs)
chr3 (370-707)||(11391211-11391556)
chr3 (21-304)||(11391622-11391906)
chr3 (464-707)||(11366620-11366863)
chr3 (464-707)||(11385166-11385409)
chr3 (464-707)||(11375328-11375571)
chr3 (137-231)||(11367031-11367125)
chr3 (137-231)||(11375739-11375833)
chr3 (137-230)||(11385512-11385605)
chr3 (137-219)||(11362713-11362795)
chr3 (20-91)||(11362862-11362933)
[»] scaffold1173 (2 HSPs)
scaffold1173 (464-707)||(1947-2190)
scaffold1173 (137-231)||(2358-2452)
[»] chr7 (4 HSPs)
chr7 (491-707)||(17192629-17192845)
chr7 (464-707)||(17186719-17186962)
chr7 (137-219)||(17186581-17186663)
chr7 (133-231)||(17192131-17192228)
[»] chr6 (1 HSPs)
chr6 (591-649)||(17854520-17854578)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-147; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 370 - 707
Target Start/End: Complemental strand, 11391556 - 11391211
Alignment:
Q  370 acaagatgtattttgtcaaactctatgttgctcttaaattgagcagatattcaagtnnnnnnnngtttatcaaatatacta--------gcatagccatt 461  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |        |||||||||||||||||        |||||||||||    
T  11391556 acaagatgtattttgtcaaactctatgttgctcttaaatttagcagatattcaaataaaaaaaagtttatcaaatatactaatatactagcatagccatt 11391457  T
Q  462 gggattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattga 561  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  11391456 gggattctttttttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatggggtcatctgataataaaatggataggttggaaagtattga 11391357  T
Q  562 agtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcata 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  11391356 agtggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagtttgacacaactttcttaactcgcata 11391257  T
Q  662 ctgcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  11391256 ctgcctttattggatcgatatcccccgataatgttaatttcttctc 11391211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 11391906 - 11391622
Alignment:
Q  21 atgtgccatttatttagcaaacaatgagacatatgtagccaaaaccaaacatattgatgcgaggtatcacaagtcaaagttacgtgcatctggatataga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11391906 atgtgccatttatttagcaaacaatgagacatatgtagccaaaagcaaacatattgatgcgaggtatcacaagttaaagttacgtgcatctggatataga 11391807  T
Q  121 tcagttaaaaagtagctgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11391806 tcagttaaaaagtagctgatgtattgaccaagttagtcattactaacaaattgaagcactgcttgaacttgcatgtttcaagcactatatatattttatc 11391707  T
Q  221 ttattaatata-cnnnnnnnatgtttcttgtgattagaaatagttgatggtgagatcaatttcttgtgatgtttttgcatgcttt 304  Q
    |||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11391706 ttattaatatatttttttttatgtttcttgtgattagaaatagttgatggtgagatcaatttcttgtgatgtttttgcatgcttt 11391622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 464 - 707
Target Start/End: Complemental strand, 11366863 - 11366620
Alignment:
Q  464 gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag 563  Q
    ||||||||||||| |||||||||||||| |||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||  ||||| ||||||    
T  11366863 gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag 11366764  T
Q  564 tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact 663  Q
    |||||||||||||| |||  ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| |||    
T  11366763 tggaataacttcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact 11366664  T
Q  664 gcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
     |||||| |||||| |||||||| |||| ||| |||||||||||    
T  11366663 acctttactggatcaatatccccagatactgtcaatttcttctc 11366620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 464 - 707
Target Start/End: Complemental strand, 11385409 - 11385166
Alignment:
Q  464 gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag 563  Q
    ||||||||||||| |||||||||||||| |||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||  ||||| ||||||    
T  11385409 gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag 11385310  T
Q  564 tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact 663  Q
    |||||||| ||||| |||  ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| |||    
T  11385309 tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact 11385210  T
Q  664 gcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
     |||||| |||||| |||||||| |||| ||| |||||||||||    
T  11385209 acctttactggatcaatatccccagatactgtcaatttcttctc 11385166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 464 - 707
Target Start/End: Complemental strand, 11375571 - 11375328
Alignment:
Q  464 gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag 563  Q
    ||||||||||||| |||||||||||||| |||||||||| |  ||||||||||| |||| ||||||||||||||||||||||||||  ||||| ||||||    
T  11375571 gattcttttcttattatgcacatcaaacgtagtagtaattttgaaaatattgtggtggggtcatctgataataaaatggataggttccaaagtgttgaag 11375472  T
Q  564 tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact 663  Q
    |||||||| ||||| |||  ||||||| || |||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||| |||    
T  11375471 tggaataaattcatttgtatttgttgaatccttcttctcatcttttagaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact 11375372  T
Q  664 gcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
     |||||| |||||| |||||||| |||| | | |||||||||||    
T  11375371 acctttactggatcaatatccccagatactatcaatttcttctc 11375328  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 11367125 - 11367031
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatcttattaatata 231  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  11367125 tgatgtattgaccaagttactcattagtaacaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttatcttattaatata 11367031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 11375833 - 11375739
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatcttattaatata 231  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  11375833 tgatgtattgaccaagttactcattagtaacaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttatcttattaatata 11375739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 11385605 - 11385512
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatcttattaatat 230  Q
    ||||||||||||||| ||| |||||| ||| |||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||    
T  11385605 tgatgtattgaccaaattactcattagtaaaaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttatcttattaatat 11385512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 11362795 - 11362713
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttat 219  Q
    ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||    
T  11362795 tgatgtattgaccaacttactcattagtaacaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttat 11362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 11362933 - 11362862
Alignment:
Q  20 aatgtgccatttatttagcaaacaatgagacatatgtagccaaaaccaaacatattgatgcgaggtatcaca 91  Q
    |||||||||||||||| ||||||| ||||   ||||  ||| |||||||||||||||||| |||||||||||    
T  11362933 aatgtgccatttatttggcaaacattgaggtgtatgatgcccaaaccaaacatattgatgtgaggtatcaca 11362862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 464 - 707
Target Start/End: Complemental strand, 2190 - 1947
Alignment:
Q  464 gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag 563  Q
    ||||||||||||| ||||||||||||||||||||||||| |  ||||||| ||| | |  ||||||||||||||||||||||||| | ||||||||||||    
T  2190 gattcttttcttattatgcacatcaaacatagtagtaattttgaaaatatcgtggttgagtcatctgataataaaatggataggtgtcaaagtattgaag 2091  T
Q  564 tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact 663  Q
    |||||||||||||| |||  ||||||| || |||||||  ||||||| |||||||||||| |||| ||||||| ||||||||||||||| |||||| |||    
T  2090 tggaataacttcatttgtatttgttgaatccttcttcttatcttttaaaggtccaatcgatactatttcagtttgacacaactttcttagcttgcacact 1991  T
Q  664 gcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||    
T  1990 gcctttactggatcaatatcccccgataatgtcaatttcttctc 1947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1173; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 2452 - 2358
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatcttattaatata 231  Q
    ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  2452 tgatgtattgaccaacttactcattagtaacaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttatcttattaatata 2358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 491 - 707
Target Start/End: Original strand, 17192629 - 17192845
Alignment:
Q  491 catagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaagtggaataacttcatgtgtgattgttga 590  Q
    |||| |||||||||  |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||    
T  17192629 cataatagtaatcttgaaaatattgtgatggggtcatctgataataaaatggataggtttcaaagtattgaagtggaataacttcatttgtatttgttga 17192728  T
Q  591 ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatactgcctttattggatcgatatcccccgat 690  Q
    | |||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| |||||| ||| | ||||| ||||| |||||||| |||    
T  17192729 ccctttcttctcttcttttagaggtccaattgaaactatttcagtttgacacaactttcttagcttgcacactccttttatcggatcaatatcccctgat 17192828  T
Q  691 aatgttaatttcttctc 707  Q
    | ||| |||||||||||    
T  17192829 attgtcaatttcttctc 17192845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 464 - 707
Target Start/End: Original strand, 17186719 - 17186962
Alignment:
Q  464 gattcttttcttactatgcacatcaaacatagtagtaatctcaaaaatattgtgatgggttcatctgataataaaatggataggtttgaaagtattgaag 563  Q
    |||| |||||||| ||||||||||||||||||||||||| |  ||||||| ||| | || ||||||||||||||||||||||||| | |||||||||||     
T  17186719 gattgttttcttattatgcacatcaaacatagtagtaatattgaaaatatcgtggttgggtcatctgataataaaatggataggtgtcaaagtattgaac 17186818  T
Q  564 tggaataacttcatgtgtgattgttgactctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttcttaacttgcatact 663  Q
    |||||||||||||| |||  ||||||| || |||||||| ||||||| ||||||||| || |||| ||||||| ||||||||||||||| |||||| |||    
T  17186819 tggaataacttcatttgtatttgttgaatccttcttctcatcttttaaaggtccaattgatactatttcagtttgacacaactttcttagcttgcacact 17186918  T
Q  664 gcctttattggatcgatatcccccgataatgttaatttcttctc 707  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||    
T  17186919 gcctttacaggatcaatatcccccgataatgtcaatttcttctc 17186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 17186581 - 17186663
Alignment:
Q  137 tgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttat 219  Q
    ||||||||||||||||||| |||||| |||||||||||||||| |||||||||| |||||||||| ||||| |||||||||||    
T  17186581 tgatgtattgaccaagttactcattagtaacaaattgaagcaccgcttggacttacatgtttcaaacactacatatattttat 17186663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 17192131 - 17192228
Alignment:
Q  133 tagctgatgtattgaccaagttagtcattactaacaaattgaagcactgcttggacttgcatgtttcaagcactatatatattttatcttattaatata 231  Q
    ||||||||||| |||||||||  ||||||| |||||||||||| |||| ||| | ||| ||||||||||||| || |||||||| ||||||||||||||    
T  17192131 tagctgatgtagtgaccaagtcggtcattagtaacaaattgaatcactactt-gtcttacatgtttcaagcagtacatatatttaatcttattaatata 17192228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 591 - 649
Target Start/End: Complemental strand, 17854578 - 17854520
Alignment:
Q  591 ctctttcttctcctcttttagaggtccaatcgaaactacttcagttggacacaactttc 649  Q
    ||||||||||||||| ||||||| |||||| ||||||||||| ||| ||||||||||||    
T  17854578 ctctttcttctcctcatttagagctccaattgaaactacttctgtttgacacaactttc 17854520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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