View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15668_high_2 (Length: 539)
Name: NF15668_high_2
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15668_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 86 - 451
Target Start/End: Original strand, 8940785 - 8941149
Alignment:
| Q |
86 |
taaaaattcggtatccgattcaaagatcgacgaatctgattggtatcgtctttaaagtggtagtaccatgcatgctataagtactatatattttataatt |
185 |
Q |
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| T |
8940785 |
taaaaactcggtatccgatataaagaccgacgaatttgattgatattatctttaaagtagtagtacgatgcatgcaataagtact-tatttttgataatt |
8940883 |
T |
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| Q |
186 |
ttgttaattgtaatgttgtaggtgtggactactgtctcaaagaaattgtagttgatggaagctgtaaagatcgttggccacatggacatgattgtacaga |
285 |
Q |
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| T |
8940884 |
ttgttgattataatgttgtaggtgtggactactgtctcaaagaaattgtagttgatggaagctgtaaagatcattggccacatggacgtgattgtacaga |
8940983 |
T |
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| Q |
286 |
tgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaactttcaagtaataagcgtcgatgtcaatgttgtatcaattgt |
385 |
Q |
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| T |
8940984 |
tgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaactttcaagtaataagcgtcgatgtcaatgttgtatcaattgt |
8941083 |
T |
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| Q |
386 |
ccggataaagccaacgtattaagcgacgcttttcatgttaacgatacacatgacagatgtagcaag |
451 |
Q |
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| T |
8941084 |
ccggataaagccaacgtattaagcgacgcttttcatgttaacgttacacatgatagatgtagcaag |
8941149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 8976079 - 8975908
Alignment:
| Q |
19 |
tcttctccctcacctacggatctggtatgctacatat-cacaacctatgattattaatatttttcgtttaaaaattcggtatccgattcaaagatcgacg |
117 |
Q |
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| T |
8976079 |
tcttcaccctcacctatggatctggtatgctatatattcacaacctatgattattaatatttttcttttaaaaactcgatatccgattcaaaaactgacg |
8975980 |
T |
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| Q |
118 |
aatctgattggtatcgtctttaaagtggtagtaccatgcatgc--tataagtactatatattttataatttt |
187 |
Q |
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| T |
8975979 |
aagccgattgatattttctttaaagtagtaataccatgcatgctatataagtactatatttttgataatttt |
8975908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 8992016 - 8991904
Alignment:
| Q |
273 |
atgattgtacagatgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaactttcaagtaataagcgtcgatgtcaatg |
372 |
Q |
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| T |
8992016 |
atgattgtagagaagaattcatgtctggagtaggatcatggaccatggctcaggattgtcaatgtcaacaactttcagataataagcgtcgatgccaatg |
8991917 |
T |
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| Q |
373 |
ttgtatcaattgt |
385 |
Q |
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| T |
8991916 |
ttgcatcaattgt |
8991904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 273 - 385
Target Start/End: Complemental strand, 9016463 - 9016351
Alignment:
| Q |
273 |
atgattgtacagatgaattcattaatggagtaggatcatggaccatggctaaagattgtcaatgtcaacaactttcaagtaataagcgtcgatgtcaatg |
372 |
Q |
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| T |
9016463 |
atgattgtagagaagaattcatgtctggagtaggatcatggaccatggctcaggattgtcaatgtcaacaactttcagataataagcgtcgatgccaatg |
9016364 |
T |
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| Q |
373 |
ttgtatcaattgt |
385 |
Q |
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| T |
9016363 |
ttgcatcaattgt |
9016351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8940741 - 8940786
Alignment:
| Q |
19 |
tcttctccctcacctacggatctggtatgctacatatcacaaccta |
64 |
Q |
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| T |
8940741 |
tcttcaccctcacctacggatctggtatgctatatatcacaaccta |
8940786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 8941186 - 8941222
Alignment:
| Q |
488 |
cttcatatactatgaagttttatattttggtcctttg |
524 |
Q |
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| T |
8941186 |
cttcatatactatgaagttttatattttggtcctttg |
8941222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 8992229 - 8992181
Alignment:
| Q |
27 |
ctcacctacggatctggtatgctacatatcacaacctatgattattaat |
75 |
Q |
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| T |
8992229 |
ctcacctatggatctggtatgctttatatcataacctatgattattaat |
8992181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 9016676 - 9016628
Alignment:
| Q |
27 |
ctcacctacggatctggtatgctacatatcacaacctatgattattaat |
75 |
Q |
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| T |
9016676 |
ctcacctatggatctggtatgctttatatcataacctatgattattaat |
9016628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 33585627 - 33585663
Alignment:
| Q |
88 |
aaaattcggtatccgattcaaagatcgacgaatctga |
124 |
Q |
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| T |
33585627 |
aaaattcggtatccgattcaaagatcgattaatctga |
33585663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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