View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15668_high_4 (Length: 349)

Name: NF15668_high_4
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15668_high_4
NF15668_high_4
[»] chr5 (2 HSPs)
chr5 (11-107)||(32282610-32282706)
chr5 (264-332)||(32282869-32282930)
[»] scaffold0209 (1 HSPs)
scaffold0209 (46-88)||(30207-30249)
[»] chr8 (2 HSPs)
chr8 (46-88)||(589110-589152)
chr8 (46-88)||(624770-624812)
[»] chr3 (1 HSPs)
chr3 (53-86)||(26535104-26535137)


Alignment Details
Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 32282610 - 32282706
Alignment:
Q  11 gcagcacagaagattatgcatgttaagatctgaagttcgattttctttggtgtcaatttcaatggacaagtccatataaattggatgctgagttttc 107  Q
    ||||||||||||||||||||||||| |||| || ||||||||  ||||| ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  32282610 gcagcacagaagattatgcatgttacgatccgaggttcgattccctttgttgtcaattttagtgggcaagtccatataaattggatgctgagttttc 32282706  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 32282869 - 32282930
Alignment:
Q  264 cacatgttagataatatcatcctaatgttatatcctcatctaatctaagcatacttaactacataattc 332  Q
    ||||||||||| ||||||||| ||||||  |||||||     |||||||||||||||||||||||||||    
T  32282869 cacatgttagacaatatcatcataatgt--tatcctc-----atctaagcatacttaactacataattc 32282930  T

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Target: scaffold0209 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 30207 - 30249
Alignment:
Q  46 ttcgattttctttggtgtcaatttcaatggacaagtccatata 88  Q
    ||||||||  |||| ||||||||||||||||||||||||||||    
T  30207 ttcgatttcttttgatgtcaatttcaatggacaagtccatata 30249  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 589152 - 589110
Alignment:
Q  46 ttcgattttctttggtgtcaatttcaatggacaagtccatata 88  Q
    ||||||||  |||| ||||||||||||||||||||||||||||    
T  589152 ttcgatttcttttgatgtcaatttcaatggacaagtccatata 589110  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 624770 - 624812
Alignment:
Q  46 ttcgattttctttggtgtcaatttcaatggacaagtccatata 88  Q
    ||||||||  |||| ||||||||||||||||||||||||||||    
T  624770 ttcgatttcttttgatgtcaatttcaatggacaagtccatata 624812  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 26535104 - 26535137
Alignment:
Q  53 ttctttggtgtcaatttcaatggacaagtccata 86  Q
    ||||||||||||||||||| ||||||||||||||    
T  26535104 ttctttggtgtcaatttcagtggacaagtccata 26535137  T

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