View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15668_high_5 (Length: 340)
Name: NF15668_high_5
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15668_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 32282926 - 32283221
Alignment:
| Q |
25 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32282926 |
aattcggactcggcatgttaaagttcattaatactccacaagtgttttatagactcttcgtaaattcaacatcatttgaattcttagatgttccaaggta |
32283025 |
T |
|
| Q |
125 |
aaaatcctccaacggaaccttcaaggggtaaaccacggtcaatgtttatgtacttgaaattggttaaagaattctcacatgaaaaataacataaatgtag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32283026 |
aaaatcctccaacggaaccttcaaggggtgaaccacggtcaatg-ttatgtacttgaaattggtcaaagaattctcacatgaaaaataacataaatgtag |
32283124 |
T |
|
| Q |
225 |
ttacaactgttcaaggttaaatgtca-ttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaa |
320 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32283125 |
ttacaacattacaaggttaaatgtcatttttgttgggaccacggttcaccattcggacaataattctatgtctaggttttgtagttttcacgtaaaa |
32283221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 36879156 - 36879108
Alignment:
| Q |
105 |
ttcttagatgttccaaggtaaaaatcctccaacggaaccttcaaggggt |
153 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
36879156 |
ttcttagatgtcccaaggtaaagatcctccaaagataccttcaaggggt |
36879108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University