View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15668_high_6 (Length: 328)

Name: NF15668_high_6
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15668_high_6
NF15668_high_6
[»] chr5 (5 HSPs)
chr5 (126-236)||(32717033-32717143)
chr5 (1-57)||(32717249-32717305)
chr5 (93-140)||(32717168-32717215)
chr5 (207-236)||(2545008-2545037)
chr5 (199-236)||(24197311-24197348)
[»] chr1 (2 HSPs)
chr1 (211-249)||(4605457-4605496)
chr1 (207-257)||(31923850-31923901)
[»] chr6 (2 HSPs)
chr6 (207-237)||(13552617-13552647)
chr6 (207-259)||(10546175-10546227)
[»] chr8 (2 HSPs)
chr8 (207-247)||(35773157-35773198)
chr8 (170-198)||(27533425-27533453)
[»] chr3 (1 HSPs)
chr3 (211-259)||(12767162-12767210)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 32717143 - 32717033
Alignment:
Q  126 ggagtactagcgttcatacgtgcactttgtactcgtctattcaatttttattgcgttaatacatataaattatggttaaatgtgttttaccctttgtaat 225  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||  | ||||    
T  32717143 ggagtactagcgtttatacgggcactttgtacttgtctattcaatttttattgcgttaatacatataaattagggttaaaggtgttttaccccctataat 32717044  T
Q  226 ataggtcattt 236  Q
    |||||||||||    
T  32717043 ataggtcattt 32717033  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32717305 - 32717249
Alignment:
Q  1 aatattatatttaaggacgaaggtagtaccatctaatatatttcttcatactcactc 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  32717305 aatattatatttaaggacgaaggtagtaccatctaatatatttcttcgtacttactc 32717249  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 32717215 - 32717168
Alignment:
Q  93 tttaatacatgagtatcaaataatattctagttggagtactagcgttc 140  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||    
T  32717215 tttaatacatgagtatcaaatcatattctagtaggagtactagcgttc 32717168  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 2545008 - 2545037
Alignment:
Q  207 gtgttttaccctttgtaatataggtcattt 236  Q
    ||||||||||||||||||||||||||||||    
T  2545008 gtgttttaccctttgtaatataggtcattt 2545037  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 24197311 - 24197348
Alignment:
Q  199 ggttaaatgtgttttaccctttgtaatataggtcattt 236  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  24197311 ggttaaaggtgttttaccctctgtaatataggtcattt 24197348  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 4605496 - 4605457
Alignment:
Q  211 tttaccctttgtaatataggtca-tttcggttttttcccc 249  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4605496 tttaccctttgtaatataggtcattttcggttttttcccc 4605457  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 31923901 - 31923850
Alignment:
Q  207 gtgttttaccctttgtaatataggtca-tttcggttttttccccaataaaat 257  Q
    |||||||||||| |||||||||||||| ||| |||||||||||| |||||||    
T  31923901 gtgttttaccctctgtaatataggtcatttttggttttttcccctataaaat 31923850  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 237
Target Start/End: Original strand, 13552617 - 13552647
Alignment:
Q  207 gtgttttaccctttgtaatataggtcatttc 237  Q
    |||||||||||||||||||||||||||||||    
T  13552617 gtgttttaccctttgtaatataggtcatttc 13552647  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 10546227 - 10546175
Alignment:
Q  207 gtgttttaccctttgtaatataggtcatttcggttttttccccaataaaattt 259  Q
    |||||||||||| |||||||||||||||||  | |||||||||  ||||||||    
T  10546227 gtgttttaccctctgtaatataggtcattttcggtttttcccctgtaaaattt 10546175  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 35773157 - 35773198
Alignment:
Q  207 gtgttttaccctttgtaatataggtca-tttcggttttttcc 247  Q
    |||||||||||| |||||||||||||| ||||||||||||||    
T  35773157 gtgttttaccctctgtaatataggtcattttcggttttttcc 35773198  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 198
Target Start/End: Original strand, 27533425 - 27533453
Alignment:
Q  170 tttttattgcgttaatacatataaattat 198  Q
    |||||||||||||||||||||||||||||    
T  27533425 tttttattgcgttaatacatataaattat 27533453  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 12767210 - 12767162
Alignment:
Q  211 tttaccctttgtaatataggtcatttcggttttttccccaataaaattt 259  Q
    ||||||| ||||||||||||||||||| | |||||||||  ||||||||    
T  12767210 tttaccccttgtaatataggtcatttctgatttttcccctgtaaaattt 12767162  T

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