View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15668_high_8 (Length: 275)
Name: NF15668_high_8
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15668_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 38117314 - 38117538
Alignment:
| Q |
18 |
tatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctg |
117 |
Q |
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| T |
38117314 |
tatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctg |
38117413 |
T |
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| Q |
118 |
tagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagt |
217 |
Q |
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| T |
38117414 |
tagcattttagcttgagggatggcatttcatgaacacgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagt |
38117513 |
T |
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| Q |
218 |
ccaaccttttccccccaaaatgtta |
242 |
Q |
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| T |
38117514 |
ccaaccttttccccccaaaatgtta |
38117538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 215
Target Start/End: Original strand, 38161156 - 38161308
Alignment:
| Q |
56 |
tgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacg |
155 |
Q |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa---- |
38161250 |
T |
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| Q |
156 |
agtacaggaccg-tgtttcttgaattctgtaagtgctgcatggtaaaa-agatgcagtagta |
215 |
Q |
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| T |
38161251 |
---acaagaccaatgtttcttgaattatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
170 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
219 |
Q |
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| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 49005116 - 49005245
Alignment:
| Q |
18 |
tatcattagattaaactttacttgaaaatatgtaatcatgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
49005116 |
tatcattagattaaactttacttgaaaatatgtaatcatcattcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatcta |
49005215 |
T |
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| Q |
118 |
tagcattttagcttgagggatggcatttca |
147 |
Q |
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|||||| |||| |||| ||||||||||||| |
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| T |
49005216 |
tagcatcttagtttgaaggatggcatttca |
49005245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 242
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
203 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
242 |
Q |
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| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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