View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15668_low_10 (Length: 255)
Name: NF15668_low_10
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15668_low_10 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 23037174 - 23036951
Alignment:
| Q |
13 |
aatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23037174 |
aatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaa |
23037075 |
T |
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| Q |
113 |
gacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
23037074 |
gacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagag |
23036975 |
T |
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| Q |
213 |
gattcatcggcaaactgatcagat |
236 |
Q |
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||||||||| |||||||||||||| |
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| T |
23036974 |
gattcatcgacaaactgatcagat |
23036951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23146919 - 23146703
Alignment:
| Q |
20 |
ctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaac |
119 |
Q |
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|||||||||||| ||| | || |||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||| |||||| |||| | |
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| T |
23146919 |
ctgaagctgtacgttcgtcaatatacacaattgtttcgagggctgcttttggcaatgaatgcaaagaccaagataaatttatatcagtggtaaaacaatc |
23146820 |
T |
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| Q |
120 |
cataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcat |
219 |
Q |
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| T |
23146819 |
aataaaggttgcagggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcat |
23146720 |
T |
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| Q |
220 |
cggcaaactgatcagat |
236 |
Q |
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|| |||||||||||||| |
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| T |
23146719 |
cgacaaactgatcagat |
23146703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23040044 - 23039828
Alignment:
| Q |
20 |
ctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaac |
119 |
Q |
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|||||||||||| ||| | || |||||||||||||| ||| |||| ||||||||||||||||| |||||||| |||||||||||| |||||| |||| | |
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| T |
23040044 |
ctgaagctgtacgttcttcaatatacacaattgtttcaagggctgcctttggcaatgaatgcaaggaccaagacaaatttatatcagtggtaaaacaatc |
23039945 |
T |
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| Q |
120 |
cataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcat |
219 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||| |||||| ||||| |
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| T |
23039944 |
aataaaggttgccgggggttttgacttgggagatttgtttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcat |
23039845 |
T |
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| Q |
220 |
cggcaaactgatcagat |
236 |
Q |
| |
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|| |||||||||||||| |
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| T |
23039844 |
cgacaaactgatcagat |
23039828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 23033850 - 23033633
Alignment:
| Q |
20 |
ctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaac |
119 |
Q |
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||||||||||| |||| | || |||||||||||||| ||| | || |||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
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| T |
23033850 |
ctgaagctgtaatttcttcaatatacacaattgtttcaagggccgcctttggcaatgaatgcagagaccaagaaaaatttatatcggtggtaaaacaaac |
23033751 |
T |
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| Q |
120 |
cataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcat |
219 |
Q |
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||||| ||||||| |||||||||||||||||||||||||| || |||||||||| || | |||||||| | ||||||||||| |||| | ||||| |
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| T |
23033750 |
actaaagattgcaggaggttttaacttgggagatttgtttccttcttctaaatggcttcaacatgttactggtattaggcctaagcttgagaagtttcat |
23033651 |
T |
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| Q |
220 |
cggcaaactgatcagatg |
237 |
Q |
| |
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|| |||| |||| ||||| |
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| T |
23033650 |
cgacaaaatgatgagatg |
23033633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 23018253 - 23018069
Alignment:
| Q |
20 |
ctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaac |
119 |
Q |
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|||||||||||||||| | || |||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| |||||| | || | |
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| T |
23018253 |
ctgaagctgtactttcttcgatatacacaattgtttcaagggctgcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatc |
23018154 |
T |
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| Q |
120 |
cataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaag |
204 |
Q |
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||||| |||||| |||||| |||||||||||| |||||| || |||||||||| || | | |||| ||||||||||||||| |
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| T |
23018153 |
tgtaaagattgcagcaggttttgacttgggagattcgtttccttcttctaaatggcttcaatatgttaccggtttgaggcctaag |
23018069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 23025267 - 23025185
Alignment:
| Q |
23 |
aagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatca |
105 |
Q |
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| T |
23025267 |
aagctgtactttcttcaatatacactattgtttcaaaatctgcctttggcaagaaattcaaagaccaagaaaaatttatatca |
23025185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 5542 - 5732
Alignment:
| Q |
43 |
tacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggtttta |
142 |
Q |
| |
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|||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |||| | ||||||| |||||| |
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| T |
5542 |
tacacaattgtttcgagggcagcctttggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaacaaacaataaggattgcaggaggttttg |
5641 |
T |
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| Q |
143 |
acttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatca |
233 |
Q |
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||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||| | ||||||| ||||||||||| |
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| T |
5642 |
acttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaactgatca |
5732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 236
Target Start/End: Complemental strand, 21780911 - 21780718
Alignment:
| Q |
43 |
tacacaattgtttcgaggtctgcgtttggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggtttta |
142 |
Q |
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||||| |||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||| | ||| |||| | ||||| ||| ||| ||||||| |
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| T |
21780911 |
tacactattgtttcgaggtccgcctttggaaataaatgcaaagaccaagaaaaatttatatcagttataaaacaatcgataaaagtttcagcaggtttta |
21780812 |
T |
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| Q |
143 |
acttgggagatttgtttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagat |
236 |
Q |
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| T |
21780811 |
atttgggagatttgtttccttctactaaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagat |
21780718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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