View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15668_low_3 (Length: 359)

Name: NF15668_low_3
Description: NF15668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15668_low_3
NF15668_low_3
[»] chr5 (5 HSPs)
chr5 (12-343)||(28532334-28532665)
chr5 (228-285)||(29021373-29021430)
chr5 (51-106)||(29021558-29021613)
chr5 (50-103)||(28673512-28673565)
chr5 (148-193)||(41900804-41900849)
[»] chr6 (2 HSPs)
chr6 (16-343)||(6588487-6588808)
chr6 (18-108)||(6416827-6416917)
[»] chr3 (6 HSPs)
chr3 (18-108)||(13469880-13469970)
chr3 (233-339)||(51763815-51763921)
chr3 (147-180)||(514011-514044)
chr3 (16-108)||(51763604-51763696)
chr3 (58-103)||(513925-513970)
chr3 (151-187)||(51763736-51763772)
[»] chr4 (8 HSPs)
chr4 (229-343)||(21833749-21833863)
chr4 (16-97)||(21833512-21833593)
chr4 (148-187)||(1601186-1601225)
chr4 (147-190)||(53761152-53761195)
chr4 (244-279)||(1601088-1601123)
chr4 (16-98)||(532589-532674)
chr4 (146-180)||(21833639-21833673)
chr4 (16-108)||(53761018-53761110)
[»] chr7 (2 HSPs)
chr7 (228-284)||(10615269-10615325)
chr7 (18-97)||(10615459-10615538)
[»] chr1 (3 HSPs)
chr1 (12-97)||(19467647-19467732)
chr1 (147-187)||(19467779-19467819)
chr1 (229-343)||(19467870-19467984)
[»] chr8 (2 HSPs)
chr8 (50-103)||(18314876-18314929)
chr8 (147-187)||(18314970-18315010)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 28532665 - 28532334
Alignment:
Q  12 cttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532665 cttcacaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaaca 28532566  T
Q  112 ttgatggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattgatgtctttctcattatcatcgtattcaatatc 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  28532565 ttgatggttataagcaattattaaccgatgcaggcattgcttctgctctccgtgagagaccgacattgatgtctttctcgttatcatcgtattcaatatc 28532466  T
Q  212 acgtcctccattcatgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532465 acgtcctccattcatgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttg 28532366  T
Q  312 ctctacactattgcaaggggaggtcttccttt 343  Q
    ||||||||||||||||||||||||||||||||    
T  28532365 ctctacactattgcaaggggaggtcttccttt 28532334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 29021430 - 29021373
Alignment:
Q  228 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgt 285  Q
    ||||||||| | |||||||  |||||||||||||||||||| |||||||||| |||||    
T  29021430 acttcacatttcattgacttgttggtgagtttcaagggtttaacttgtcttgatttgt 29021373  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 29021613 - 29021558
Alignment:
Q  51 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 106  Q
    |||||| |||||||||||||||||||  | | |||||||||||||||| |||||||    
T  29021613 atcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagt 29021558  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 28673512 - 28673565
Alignment:
Q  50 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 103  Q
    ||||||| |||||||||||||||| ||| | | |||||||||||||||| ||||    
T  28673512 catcaacgaccaatcacttttccatttgataaacaactgtaagcttctcgaaga 28673565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 41900804 - 41900849
Alignment:
Q  148 ttgcttctgctctccgtgagagaccaacattgatgtctttctcatt 193  Q
    ||||||||||||||||  ||||||||||||||| |||||| |||||    
T  41900804 ttgcttctgctctccgccagagaccaacattgaggtctttatcatt 41900849  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 6588487 - 6588808
Alignment:
Q  16 tcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtcaacattga 115  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||| |||||||||||       
T  6588487 tcaaacttcgcaaggttaatctttcttactttcccatcaacaatcaatcgcttttccacttgttcaacaattgtaagcttctccaggaagtcaacatatt 6588586  T
Q  116 tggttataagcaattattaaccgatgcagtcattgcttctgctctccgtgagagaccaacattgatgtctttctcattatcatcgtattcaatatcacgt 215  Q
    ||||| |   |    ||||||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||         || ||  |||||||||| |    
T  6588587 tggttgt---cgtgaattaaccaatgcaggcattgcttctgctctccgtgagagaccaaaattgacgtcttt---------attgttatcaatatcactt 6588674  T
Q  216 cctc------cattcatgacttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagt 309  Q
    | ||       |||||   |||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||| |  ||| ||||| || |||||||    
T  6588675 catcatgatgaattcactgcttcacatttaattgactcattggtgagtttgaagagtttgacttgtcttggtttgtctgctttgaatatctccgatgagt 6588774  T
Q  310 tgctctacactattgcaaggggaggtcttccttt 343  Q
    ||||||||||||||||||||  | ||||||||||    
T  6588775 tgctctacactattgcaaggaaacgtcttccttt 6588808  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 6416917 - 6416827
Alignment:
Q  18 aaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 108  Q
    ||||||||||| ||||||||||||   |||||  | ||||||||||| |||||||| || |||  |||||||||||||||| |||||||||    
T  6416917 aaactccgcaaagttaatctttctagatttcctgtaaacaaccaatcccttttccagttattccacaactgtaagcttctcgaagaagtca 6416827  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 13469880 - 13469970
Alignment:
Q  18 aaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 108  Q
    ||||||||||||||||||||||||   ||||| || ||||||| ||||||||||||||| |||  |||||||||||||||| |||||||||    
T  13469880 aaactccgcaaggttaatctttctagttttcctataaacaacctatcacttttccacttattccacaactgtaagcttctcgaagaagtca 13469970  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 51763815 - 51763921
Alignment:
Q  233 acatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaagggga 332  Q
    |||| ||||||| || ||||||||||| ||||||||||||| ||||| |||| |   ||| || || |||||||||||||||||| | |||||||||| |    
T  51763815 acattttattgattcgttggtgagtttgaagggtttgacttctcttgatttgaagcgtttgaaaatctctgatgagttgctctactcgattgcaagggaa 51763914  T
Q  333 ggtcttc 339  Q
    |||||||    
T  51763915 ggtcttc 51763921  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 514011 - 514044
Alignment:
Q  147 attgcttctgctctccgtgagagaccaacattga 180  Q
    ||||||||||||||||||||||||||||||||||    
T  514011 attgcttctgctctccgtgagagaccaacattga 514044  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 51763604 - 51763696
Alignment:
Q  16 tcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 108  Q
    ||||||| || ||||||||| |||||  || |||||| ||||| ||||| ||||||||| |  |  |||||||||||||||||||||| ||||    
T  51763604 tcaaactgcgtaaggttaatttttctggctgtcccataaacaatcaatcgcttttccaccttctatgcaactgtaagcttctccaagatgtca 51763696  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 513925 - 513970
Alignment:
Q  58 accaatcacttttccacttgttcagcaactgtaagcttctccaaga 103  Q
    ||||||| ||||||||||||||||  |||||||||||||| |||||    
T  513925 accaatcgcttttccacttgttcaaaaactgtaagcttcttcaaga 513970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 51763736 - 51763772
Alignment:
Q  151 cttctgctctccgtgagagaccaacattgatgtcttt 187  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  51763736 cttctgctctccgtgaaagaccaacattgacgtcttt 51763772  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 21833749 - 21833863
Alignment:
Q  229 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 328  Q
    ||||| || |||||| |||||| |||||||| |||||||||||||||||| |||||  || |||  |||| |  |||||||| |||||| ||||||||||    
T  21833749 cttcatattttattggctcattagtgagtttgaagggtttgacttgtcttagtttgcgttctttgtatatcttggatgagttactctactctattgcaag 21833848  T
Q  329 gggaggtcttccttt 343  Q
    || ||||||||||||    
T  21833849 ggaaggtcttccttt 21833863  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 21833512 - 21833593
Alignment:
Q  16 tcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 97  Q
    ||||||||||||||||||||||||||  ||||||||| ||||| ||||| |||||||||||| | |  || |||||||||||    
T  21833512 tcaaactccgcaaggttaatctttctggctttcccataaacaatcaatctcttttccacttgctaaagaattgtaagcttct 21833593  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 1601225 - 1601186
Alignment:
Q  148 ttgcttctgctctccgtgagagaccaacattgatgtcttt 187  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  1601225 ttgcttctgctctccgtgagagaccaacattgaggtcttt 1601186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 53761152 - 53761195
Alignment:
Q  147 attgcttctgctctccgtgagagaccaacattgatgtctttctc 190  Q
    |||||||||||||||||||| ||||||||||||| |||||||||    
T  53761152 attgcttctgctctccgtgaaagaccaacattgacgtctttctc 53761195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 1601123 - 1601088
Alignment:
Q  244 actcattggtgagtttcaagggtttgacttgtcttg 279  Q
    |||||||||||||||| |||||||||||||||||||    
T  1601123 actcattggtgagtttgaagggtttgacttgtcttg 1601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 532674 - 532589
Alignment:
Q  16 tcaaactccgcaaggttaatctttcttc-ctttcc--catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctc 98  Q
    |||||||||||||||||||||||||| | | |  |  ||||||| ||||||| ||||||||||||||||  || ||||||||||||    
T  532674 tcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgttcaaaaattgtaagcttctc 532589  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 21833639 - 21833673
Alignment:
Q  146 cattgcttctgctctccgtgagagaccaacattga 180  Q
    ||||||||| |||||||||||||||||||||||||    
T  21833639 cattgcttcagctctccgtgagagaccaacattga 21833673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 53761018 - 53761110
Alignment:
Q  16 tcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagtca 108  Q
    |||||||||| |||||||||||||||  |||  |||| | | | |||||||||||||||||||| |  || ||||| ||||| ||||| ||||    
T  53761018 tcaaactccgtaaggttaatctttctggcttaaccataatcgaacaatcacttttccacttgttgaagaattgtaatcttcttcaagaggtca 53761110  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 10615325 - 10615269
Alignment:
Q  228 acttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttg 284  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  10615325 acttcacattttattgactcattggtgagtttgaagggcttgacttgtcttgatttg 10615269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 10615538 - 10615459
Alignment:
Q  18 aaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 97  Q
    ||||||||||||||||||||||||   |||| ||| ||||| ||||| ||| |||||||| ||  |||||||||||||||    
T  10615538 aaactccgcaaggttaatctttctagttttctcataaacaatcaatcccttctccacttgctcgacaactgtaagcttct 10615459  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 19467647 - 19467732
Alignment:
Q  12 cttctcaaactccgcaaggttaatctttcttcctttcccatcaacaaccaatcacttttccacttgttcagcaactgtaagcttct 97  Q
    ||||||||||||||||||||||||||||||  ||||||||| | | || ||||  |||| |||||||| | ||| |||||||||||    
T  19467647 cttctcaaactccgcaaggttaatctttctggctttcccatgagcgacaaatcgatttttcacttgtttaacaattgtaagcttct 19467732  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 19467779 - 19467819
Alignment:
Q  147 attgcttctgctctccgtgagagaccaacattgatgtcttt 187  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  19467779 attgcttctgctatccgtgagagaccaacattgaggtcttt 19467819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 343
Target Start/End: Original strand, 19467870 - 19467984
Alignment:
Q  229 cttcacatattattgactcattggtgagtttcaagggtttgacttgtcttggtttgtattattttaatatttctgatgagttgctctacactattgcaag 328  Q
    |||| ||| |||||||||||||| ||||||| ||||||||||||| ||||  || ||  | | | ||||| ||||||||  |||||||| |||||||| |    
T  19467870 cttcgcattttattgactcattgctgagtttgaagggtttgacttctcttacttggtggtttctgaatatctctgatgaaatgctctactctattgcacg 19467969  T
Q  329 gggaggtcttccttt 343  Q
    || ||| || |||||    
T  19467970 ggaagggctaccttt 19467984  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 18314876 - 18314929
Alignment:
Q  50 catcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaaga 103  Q
    ||||||| | ||||| ||||||||||||||||  ||||||||||||||| ||||    
T  18314876 catcaacgatcaatcgcttttccacttgttcaagaactgtaagcttctcgaaga 18314929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 18314970 - 18315010
Alignment:
Q  147 attgcttctgctctccgtgagagaccaacattgatgtcttt 187  Q
    ||||||| ||||||||||||||||||||| |||| ||||||    
T  18314970 attgcttttgctctccgtgagagaccaactttgaggtcttt 18315010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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