View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_high_2 (Length: 613)
Name: NF15669_high_2
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 17 - 601
Target Start/End: Complemental strand, 2522508 - 2521924
Alignment:
| Q |
17 |
aatatttacttaatattttctgttcaaatgacaaaccaggtgaaacattttcttgaggagcattggctttgaagaacctagtgtgatgattcttctgagc |
116 |
Q |
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| T |
2522508 |
aatatttacttaatattttctgttcaaatgacaaaccaggtgaaacattttcttgaggagaattggctttgaagaacctagtgtgatgattcttctgagc |
2522409 |
T |
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| Q |
117 |
aacaatcaaagtaaattttggacaccaactttcatcataatgcttacatgcctgcaaataaaatttcaataaaattcatcatgtaatttcaatattcaga |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2522408 |
aacaatcaaagtaaactttggacaccaactttcatcataacacttacatgcctgcaaataaaatttcaataaaattcataatgtaatttcaatattcaga |
2522309 |
T |
|
| Q |
217 |
cttaaaatttacattgttgaacatatatatacctttatgatttcattcaattcaatgttgaggacttggttgaactgtgattcgctcacgccgtccctaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2522308 |
cttaaaatttacattgttgaacatatatatacctttatgatttcattcaattcaatgttgaggacttggttgaactgtgattcgctcacgccgtccctaa |
2522209 |
T |
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| Q |
317 |
caaaccatggaaattcaatgacctttttctattttaccaaattcatcgaaattgccttgtaaacagacctgaaaattataatttgttgaggctttactcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2522208 |
caaaccatggaaattcaatgacctttttctattttaccaaattcatcgaaattgccttgtaaacagacctgaaaattataatttgttgaggctttactcc |
2522109 |
T |
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| Q |
417 |
tgaagttgtttggaagtctttaagcaactcactatagagtgaaacaacgtgacgaatcattagaaggcgagggagaaaacatttactcgttttgaattat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2522108 |
tgaagttgtttggaagtctttaagcaactcactatagagtgaaacaacgtgacgaatcattagaaggtgagggagaaaacatttactcgttttgaattat |
2522009 |
T |
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| Q |
517 |
aaaaatatgaaagaataatgcaacaccttataaattctagtttgtagaaataatcacactcattagaaaacacgaacctgatgat |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2522008 |
aaaaatatgaaagaataatgcaacaccttataaattctagtttgtagaaataatcacactcgttagaaaacacgaacctgatgat |
2521924 |
T |
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