View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_high_4 (Length: 472)
Name: NF15669_high_4
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 32030576 - 32030108
Alignment:
| Q |
1 |
gaatcacctgttctcctgccttgacagaaagggggctccttagggaaaataggtaatcccaagagaaaagaccagctggtcctttgacttcataagcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030576 |
gaatcacctgttctcctgccttgacagaaagggggctccttagggaaaataggtaatcccaagagaaaagaccagctggtcctttgacttcataagcatg |
32030477 |
T |
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| Q |
101 |
atcatctgtagtcactctggcactgtggttaatctgatccagaaattgaatttggaaaatgtcatttccatattttgttgaagcatattgatgggagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32030476 |
atcatctgtagtcactctggcactgtggttaatctgatccagaaattgaatttggaaaatgttatttccatattttgttgaagcatattgatgggagaag |
32030377 |
T |
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| Q |
201 |
acaaaatcagtagaaaaacaagactcaatttggattagtctcctaccgcaattaaaaccagtttgtggtccttcacatacaaaagaagtccttgtaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030376 |
acaaaatcagtagaaaaacaagactcaatttggattagtctcctaccgcaattaaaaccagtttgtggtccttcacatacaaaagaagtccttgtaaact |
32030277 |
T |
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| Q |
301 |
attagatattgaacaaaagagcttaacttcaatttgtaggagaaaatattgtttaaaaaacttataactacaagattctaagtattttcttcataagtac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030276 |
attagatattgaacaaaagagcttaacttcaatttgtaggagaaaatattgtttaaaaaacttataactacaagattctaagtattttcttcataagt-- |
32030179 |
T |
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| Q |
401 |
tactagttaagaaaattaactgatctggctctaaaattatgtccactctaagaatatcatagacagttttat |
472 |
Q |
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| T |
32030178 |
-actagttaagaaaattaactgatctggctctaaaattatgtccactctaagaatatcatagacagttttat |
32030108 |
T |
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