View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_high_7 (Length: 326)
Name: NF15669_high_7
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 980220 - 980489
Alignment:
| Q |
11 |
cataggtcacacagagaaaaatcttggtcgaatacctttaaacagacatctggtccgaactttctagaaggggatatcccaattcccaaacctcgaacac |
110 |
Q |
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| T |
980220 |
cataggtcacacaaagaaaaatcttggtcgaatacctttaaacagacatctggtccgaactttctagaaggggatatcccaattcccaaacctcgaacac |
980319 |
T |
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| Q |
111 |
gacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcagctgcggatttttgatcttc |
210 |
Q |
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| T |
980320 |
gacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcagctgcggatttttgatcttc |
980419 |
T |
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| Q |
211 |
gggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaccggggtttt |
280 |
Q |
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| T |
980420 |
gggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaccggggtttt |
980489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 102 - 310
Target Start/End: Original strand, 27146425 - 27146633
Alignment:
| Q |
102 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcatatggattagcatacattgttgaaaaggcactagactcagctgcggattt |
201 |
Q |
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| T |
27146425 |
ctcgaacacgacccgagcgctcaggtccaaatacttttccaattgcatcgtatggattagcatacattgttgaaaaggcactagactcaactgcggattt |
27146524 |
T |
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| Q |
202 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaccggggttttnnnnnnnnntagaagtagtca |
301 |
Q |
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| T |
27146525 |
ttgatcttcgggcaagtgatttaaaactttagcctagaagtggaaagttcaagtcctcaaaccaattaaacggggttttaaaaaaaattagaagtagtca |
27146624 |
T |
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| Q |
302 |
agctccttc |
310 |
Q |
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| T |
27146625 |
agctccttc |
27146633 |
T |
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