View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_high_9 (Length: 315)
Name: NF15669_high_9
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 56231622 - 56231320
Alignment:
| Q |
1 |
caacaaactagaccgtaaatacaaccagtatatacttacgcgtcttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231622 |
caacaaactagaccgtaaatacaaccagtatatacttacgcgttttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagct |
56231523 |
T |
|
| Q |
101 |
tgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaactt---gacttggttaatta |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
56231522 |
tgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaacttgacgacttggttaatta |
56231423 |
T |
|
| Q |
198 |
atggtatgtc---acaagaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgc |
294 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231422 |
atggtatgtcaaaagaagaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatctatggtacttgc |
56231323 |
T |
|
| Q |
295 |
agc |
297 |
Q |
| |
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||| |
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| T |
56231322 |
agc |
56231320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 39189359 - 39189046
Alignment:
| Q |
1 |
caacaaactagaccgtaaatacaaccagtatatacttacgcgtcttcaactggtgcttcagccaatcttgcctcagcagcagtaatgaggggataaagct |
100 |
Q |
| |
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|||||||| |||||| |||||||| |||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
39189359 |
caacaaacaagaccgcaaatacaagcagtatatacttacgcgttttcaaccggtgcttcagccaattttgcctcagcagcagtaatgagtggataaagct |
39189260 |
T |
|
| Q |
101 |
tgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatg---------gaaaacttg----act |
187 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||| |
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| T |
39189259 |
tgttttctggcaaagctgtagaaaggctagctccctgataatcaatcgataatggaaatattagagaagaaaatggaagtgatagaaaaaatgaaaaact |
39189160 |
T |
|
| Q |
188 |
tg-gttaattaatggtatgtcacaa---gaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatctctatct |
283 |
Q |
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|| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||| |
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| T |
39189159 |
tgactttattaatggtatgtcacaagatgaagaaaaattggataataccttaaagtgttgtccattatggagttgaacaacagtatcaaactctctatct |
39189060 |
T |
|
| Q |
284 |
atggtacttgcagc |
297 |
Q |
| |
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| |||||||||||| |
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| T |
39189059 |
aaggtacttgcagc |
39189046 |
T |
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