View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_low_11 (Length: 290)
Name: NF15669_low_11
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 8876649 - 8876883
Alignment:
| Q |
19 |
aggcacgcaatgcagcctttgctaggaaaagtgcataaccgaacaattcttccaatactccaaatcagaacattcatgaggttagtagtgatagttctga |
118 |
Q |
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| T |
8876649 |
aggcacgcaatgcagcctttgctaggaaaagtgcataaccgaacaattcttccaatactccaaatcagattattcatgaggttagtggtgatagttctga |
8876748 |
T |
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| Q |
119 |
gtttgtgttgtgagttagaatcttcaagtaaaagtctggatagtgttccttctagacctgaattagctcaacaagacatagattttctcaaagaatcttg |
218 |
Q |
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| T |
8876749 |
gtttgtgttgtgagttagaatcttcaagtaaaagtctggatagtgttccttctagacctgaattagctcaacaagacatatattttctcaaagaatcttg |
8876848 |
T |
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| Q |
219 |
gataaatctagaaacatcaaaagcagttactttaa |
253 |
Q |
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| T |
8876849 |
gacaaatctagaaacatcaaaagcaattactttaa |
8876883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 283
Target Start/End: Original strand, 8877570 - 8877601
Alignment:
| Q |
252 |
aagattggactaattccaataatctcattcat |
283 |
Q |
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| T |
8877570 |
aagattggactaattccaataatctcattcat |
8877601 |
T |
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