View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_low_12 (Length: 288)
Name: NF15669_low_12
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 43285680 - 43285859
Alignment:
| Q |
63 |
cttcataaattttct--actaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtagttaagatacaaacttttgtttactaaa |
160 |
Q |
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| T |
43285680 |
cttcataaattttctctactaaaaataattttggttagggcatgatgacattaaatattggtatatcttgtaattaagatacaaacttttgtttactaaa |
43285779 |
T |
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| Q |
161 |
ttgtatagtctagtctattttattagacctaatctgaaatgattattaaagcttatttccattggttctacactagatgc |
240 |
Q |
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| T |
43285780 |
ttgtatagtctagtctattttattagacctaatctaaaatgattattaaagcttatttccattggttctacactagatgc |
43285859 |
T |
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