View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15669_low_20 (Length: 219)

Name: NF15669_low_20
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15669_low_20
NF15669_low_20
[»] chr4 (19 HSPs)
chr4 (8-219)||(45385984-45386196)
chr4 (43-219)||(53619558-53619735)
chr4 (101-219)||(56462123-56462241)
chr4 (83-219)||(50000924-50001061)
chr4 (129-219)||(38535614-38535704)
chr4 (110-219)||(3329968-3330077)
chr4 (18-219)||(30940672-30940867)
chr4 (43-193)||(31847085-31847236)
chr4 (149-219)||(26521460-26521530)
chr4 (158-219)||(34107770-34107831)
chr4 (99-208)||(50483211-50483320)
chr4 (143-219)||(39001369-39001445)
chr4 (143-219)||(53170485-53170561)
chr4 (144-219)||(4419235-4419310)
chr4 (92-219)||(6865828-6865955)
chr4 (83-166)||(12918371-12918454)
chr4 (51-219)||(600658-600827)
chr4 (127-163)||(9663000-9663036)
chr4 (151-219)||(42455674-42455742)
[»] chr5 (11 HSPs)
chr5 (83-219)||(37873637-37873773)
chr5 (86-219)||(42921669-42921802)
chr5 (99-219)||(38875610-38875730)
chr5 (99-218)||(13166925-13167044)
chr5 (83-193)||(27336691-27336801)
chr5 (83-219)||(35310420-35310556)
chr5 (83-219)||(25663031-25663167)
chr5 (107-212)||(430581-430686)
chr5 (83-219)||(32269796-32269932)
chr5 (162-217)||(22188733-22188788)
chr5 (87-173)||(35455974-35456060)
[»] chr3 (14 HSPs)
chr3 (83-219)||(38146028-38146164)
chr3 (49-219)||(26772730-26772901)
chr3 (86-219)||(53785681-53785814)
chr3 (99-219)||(52741527-52741647)
chr3 (83-219)||(37132998-37133134)
chr3 (103-219)||(52411910-52412026)
chr3 (112-219)||(38978827-38978934)
chr3 (83-219)||(7502010-7502145)
chr3 (85-212)||(32546774-32546901)
chr3 (101-219)||(26856779-26856897)
chr3 (83-219)||(44198739-44198875)
chr3 (83-138)||(13582562-13582617)
chr3 (89-219)||(38670885-38671015)
chr3 (127-219)||(51234588-51234680)
[»] chr2 (14 HSPs)
chr2 (83-219)||(41867907-41868043)
chr2 (83-219)||(34814818-34814953)
chr2 (14-212)||(4412995-4413194)
chr2 (83-188)||(2888519-2888624)
chr2 (86-219)||(17344610-17344743)
chr2 (51-218)||(5532393-5532560)
chr2 (128-216)||(10579823-10579911)
chr2 (83-219)||(9685414-9685550)
chr2 (83-219)||(19161782-19161918)
chr2 (86-219)||(18744956-18745089)
chr2 (169-219)||(13413323-13413373)
chr2 (99-217)||(28224974-28225092)
chr2 (83-120)||(13147096-13147133)
chr2 (181-217)||(44684955-44684991)
[»] chr8 (16 HSPs)
chr8 (83-219)||(38815266-38815402)
chr8 (102-219)||(3187942-3188058)
chr8 (14-219)||(25021743-25021949)
chr8 (83-219)||(35739985-35740121)
chr8 (83-219)||(39434639-39434775)
chr8 (99-217)||(166133-166251)
chr8 (149-219)||(18804584-18804654)
chr8 (83-172)||(10189562-10189651)
chr8 (99-219)||(24125000-24125120)
chr8 (83-212)||(6592554-6592683)
chr8 (126-219)||(28196164-28196257)
chr8 (158-219)||(37514193-37514254)
chr8 (158-219)||(40223477-40223538)
chr8 (126-219)||(43823961-43824054)
chr8 (127-219)||(3863289-3863381)
chr8 (155-219)||(39671243-39671307)
[»] chr1 (17 HSPs)
chr1 (99-219)||(38731581-38731701)
chr1 (83-219)||(28041126-28041262)
chr1 (86-219)||(29169795-29169928)
chr1 (99-219)||(21472975-21473095)
chr1 (8-138)||(37200035-37200166)
chr1 (103-217)||(2898676-2898789)
chr1 (99-212)||(20259812-20259925)
chr1 (14-219)||(34644538-34644744)
chr1 (86-219)||(45659650-45659781)
chr1 (83-174)||(19035464-19035555)
chr1 (87-219)||(4861992-4862124)
chr1 (14-121)||(37932147-37932254)
chr1 (83-133)||(36486944-36486994)
chr1 (126-219)||(47459654-47459747)
chr1 (83-219)||(2764451-2764587)
chr1 (99-219)||(24177526-24177646)
chr1 (14-121)||(50161346-50161454)
[»] chr7 (17 HSPs)
chr7 (83-219)||(27521443-27521579)
chr7 (14-219)||(19277265-19277471)
chr7 (43-219)||(28517245-28517422)
chr7 (83-219)||(21326837-21326973)
chr7 (99-219)||(24527561-24527681)
chr7 (91-219)||(45613849-45613977)
chr7 (83-219)||(982921-983057)
chr7 (104-219)||(5825245-5825360)
chr7 (83-218)||(40726479-40726614)
chr7 (99-219)||(43856846-43856966)
chr7 (51-219)||(32584572-32584742)
chr7 (99-208)||(9281146-9281255)
chr7 (99-208)||(9292117-9292226)
chr7 (128-219)||(10905090-10905181)
chr7 (106-212)||(10032193-10032299)
chr7 (83-155)||(3676675-3676747)
chr7 (143-219)||(45424767-45424843)
[»] scaffold0490 (1 HSPs)
scaffold0490 (14-219)||(6306-6511)
[»] scaffold0148 (1 HSPs)
scaffold0148 (99-217)||(33224-33342)
[»] chr6 (9 HSPs)
chr6 (14-219)||(4206525-4206731)
chr6 (83-219)||(17249304-17249440)
chr6 (83-219)||(45676-45812)
chr6 (99-219)||(4165937-4166057)
chr6 (99-217)||(34304470-34304588)
chr6 (99-217)||(34554292-34554410)
chr6 (83-219)||(33220710-33220846)
chr6 (99-219)||(959553-959672)
chr6 (99-219)||(29338094-29338214)
[»] scaffold0009 (1 HSPs)
scaffold0009 (91-219)||(103078-103205)
[»] scaffold0186 (1 HSPs)
scaffold0186 (127-219)||(10333-10424)


Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 45385984 - 45386196
Alignment:
Q  8 tgatgcttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtca-ggaaagtggtcaaacacaagaaagcg 106  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||||||| |||||||||||||||| |||||||||    
T  45385984 tgatgcttcaccacttgtgggattagggcccgaaacttttgcggtaggacatgcaaccctaaaagctaagtcaaggaaagtggtcaaacataagaaagcg 45386083  T
Q  107 tgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtca 206  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||    
T  45386084 tgttctgacaatcaatttctttttataccatttacatttgaaacttttggctttctagcacaagaggtcattaaccttctacctaaaattcaaagggtca 45386183  T
Q  207 tgcataacaatgt 219  Q
    |||||||||||||    
T  45386184 tgcataacaatgt 45386196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 53619735 - 53619558
Alignment:
Q  43 cttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcac 141  Q
    ||||| |||||||||| ||||||||||||  |  |||| | ||||||| ||||||  ||||| |||||||||||||||||  |  ||||||||||||       
T  53619735 cttttacagtaggacaggcaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatttgt 53619636  T
Q  142 atttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
     ||||| ||||||| ||||||||||  |||||| ||| ||||||||| |||| |  ||||||| ||||||||||||||    
T  53619635 ttttgacacttttgacttcctagcatcagaggcagttgaccttctacatagagtctaaagggttatgcataacaatgt 53619558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 56462123 - 56462241
Alignment:
Q  101 aaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaa 200  Q
    |||||||||||||||||||||  | |||||||||||||    || || |||||||| |||||||||| |||||  ||| ||||||||| |||| ||||||    
T  56462123 aaagcgtgttctgacaatcaacatgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacatagagttcaaa 56462222  T
Q  201 gggtcatgcataacaatgt 219  Q
    || |||||||| |||||||    
T  56462223 ggatcatgcatgacaatgt 56462241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 50000924 - 50001061
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaa-tttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaac 181  Q
    ||||||||||||||  |||||||||||||||||||||||  | ||||| |||| |||  | ||||| ||||||||||| ||||||  |||||| ||| ||    
T  50000924 aaagtggtcaaacatgagaaagcgtgttctgacaatcaacatgcttttaatacaatttgcttttgacacttttggctttctagcatcagaggcagttgac 50001023  T
Q  182 cttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||| || | | |||||||| ||||||| ||||||    
T  50001024 cttctacatatagtccaaagggttatgcatagcaatgt 50001061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 38535614 - 38535704
Alignment:
Q  129 ttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||  ||||||| ||||||| ||||||||||| |||||  ||| ||| ||||| |||| ||||||| |||||||||| ||||||    
T  38535614 ttataccatttgcatttgacacttttgacttcctagcaccagaggttgttcaccctctacatagagttcaaagagtcatgcatagcaatgt 38535704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 3330077 - 3329968
Alignment:
Q  110 tctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgc 209  Q
    ||||||||||||  |  |||||||| |||  | ||||| ||||||||||||||||||  |||||| ||| ||||||||| |||| | |||||||| ||||    
T  3330077 tctgacaatcaacatgcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacatagagtccaaagggttatgc 3329978  T
Q  210 ataacaatgt 219  Q
    ||| ||||||    
T  3329977 atagcaatgt 3329968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 30940672 - 30940867
Alignment:
Q  18 ccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgaca 116  Q
    ||||||||||||||| |   |||| ||||| |  |||||||  ||||||||||| ||  |||| | ||||||||||||||  ||||||||||||||||||    
T  30940672 ccacttgtgggattaagtgtcaaaccttttaccataggacagacaaccctaaaagttgcgtcaagtaaagtggtcaaacatgagaaagcgtgttctgaca 30940771  T
Q  117 atcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaa 216  Q
    |||||  |  ||||||||||||  | ||||| ||||| |  ||||||||||  ||||| |      |||||| |||| |||||| |||||||||||||||    
T  30940772 atcaacatgcttttataccatt-gcttttgacactttcgatttcctagcacctgaggctg------ttctacatagagttcaaaaggtcatgcataacaa 30940864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 193
Target Start/End: Complemental strand, 31847236 - 31847085
Alignment:
Q  43 cttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcac 141  Q
    ||||| |||||||||| ||| ||||||||  |  |||| | ||||||||||||||  ||||| | |||||||||| ||||  | ||||| |||||||  |    
T  31847236 cttttacagtaggacaggcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaccatgttctgacagtcaacatgtttttttaccatttgc 31847137  T
Q  142 atttgaaacttttggcttcctagcacaagaggccgttaaccttctacctaga 193  Q
     ||||| ||||||||||||||||||  ||| || ||| ||||||||| ||||    
T  31847136 ttttgacacttttggcttcctagcatcagaagcggttgaccttctacataga 31847085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 26521530 - 26521460
Alignment:
Q  149 acttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||| |||||||||| |||||| ||| ||||||||| || | ||||||||||||||| || ||||||    
T  26521530 acttttggtttcctagcaccagaggctgttgaccttctacatacagttcaaagggtcatgcgtagcaatgt 26521460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 34107770 - 34107831
Alignment:
Q  158 ttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||| |||||| ||| ||||||||| |||| ||||||  |||||||||||||||||    
T  34107770 ttcctagcaccagaggctgttgaccttctacatagagttcaaaaagtcatgcataacaatgt 34107831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 50483211 - 50483320
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    ||||||||| |||||||||||||  |  ||||||||||||  | || || ||||| || |||||||||| |||||  ||| ||||||||| |||| ||||    
T  50483211 agaaagcgtcttctgacaatcaacatgattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttca 50483310  T
Q  199 aagggtcatg 208  Q
    || |||||||    
T  50483311 aaaggtcatg 50483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 39001445 - 39001369
Alignment:
Q  143 tttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||| |||||||||||||||| |  |||||| ||| ||||||||| |||| | |||||| | ||||||||||||||    
T  39001445 tttgacacttttggcttcctaggatcagaggcagttgaccttctacatagagtccaaaggattatgcataacaatgt 39001369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 53170561 - 53170485
Alignment:
Q  143 tttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||| ||||| || || ||||||| |||||| ||| ||||||||| |||| |||||| ||||||||||| ||||||    
T  53170561 tttgacactttcggtttgctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgt 53170485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 4419310 - 4419235
Alignment:
Q  144 ttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||| ||||| |||||| |||||  |||||  ||| ||||||||| |||| |||||||||| ||||||||||||||    
T  4419310 ttgacactttcggcttcgtagcatcagaggttgttgaccttctacatagagttcaaagggttatgcataacaatgt 4419235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 6865828 - 6865955
Alignment:
Q  92 aaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctaccta 191  Q
    |||||| ||||| ||||||||||| |||||  |  ||||||| ||||  | ||||| |||||  ||||| |||||| ||| |  ||||||||| ||| ||    
T  6865828 aaacacgagaaaacgtgttctgactatcaacatgcttttatatcatttgcttttgacactttgagcttcatagcactagatgttgttaaccttttacata 6865927  T
Q  192 gaattcaaagggtcatgcataacaatgt 219  Q
    || |||||||||| ||||||| ||||||    
T  6865928 gagttcaaagggtaatgcatagcaatgt 6865955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 12918371 - 12918454
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagca 166  Q
    |||||||||||||| |||||| |||||||||||||||||     |||||||| ||| || ||||| ||||| | ||||||||||    
T  12918371 aaagtggtcaaacataagaaatcgtgttctgacaatcaacacacttttatactatttacttttgacactttcgacttcctagca 12918454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 600658 - 600827
Alignment:
Q  51 gtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaa 149  Q
    ||||||||  ||||||||||| ||| |||| | ||||||  ||||||  ||||| |||||||| ||||| ||  |  ||||||||||||  | ||||  |    
T  600658 gtaggacagacaaccctaaaagttatgtcaagcaaagtgaccaaacatgagaaaacgtgttctaacaattaacatgcttttataccatttgcttttgtca 600757  T
Q  150 cttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||| || |||||| ||| |||||  ||| ||||||||| |||| |||||| ||||||| ||||| ||||    
T  600758 ctttcggtttcctaacaccagaggttgttgaccttctacatagagttcaaaaggtcatgtataactatgt 600827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 9663000 - 9663036
Alignment:
Q  127 ttttataccattcacatttgaaacttttggcttccta 163  Q
    |||||||||||| |||||||||||||||| |||||||    
T  9663000 ttttataccatttacatttgaaacttttgtcttccta 9663036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Original strand, 42455674 - 42455742
Alignment:
Q  151 ttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||||||  | |||||  ||||||||||||| |||| |||||| | ||||| ||||||||||    
T  42455674 ttttggcttcctagtgctagaggttgttaaccttctacatagagttcaaatgatcatggataacaatgt 42455742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 37873637 - 37873773
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||||||||||  | |||||||||||||  | ||||| ||||||||||||||||||| |||||  ||| |||    
T  37873637 aaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgacc 37873736  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||||||||||||| ||||||||    
T  37873737 ttctacatagagttcaaagggtcatgcagaacaatgt 37873773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 42921802 - 42921669
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||||||||||| ||||| |||||||||||||||||  |  ||||||||||||  | | ||| ||||| || |||||||||| |||||  |||  |||||    
T  42921802 gtggtcaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttc 42921703  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||| |||| | ||||||||||||||||||    
T  42921702 tacatagagttcagaaggtcatgcataacaatgt 42921669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 38875730 - 38875610
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||| ||||||||||||||||  | ||||| |||||||    ||||| |||||  |||||||||||| |||||| | | ||||||||| |||| ||||    
T  38875730 agaaagtgtgttctgacaatcaacatgtttttgtaccatttgtttttgacactttcagcttcctagcaccagaggctgctgaccttctacgtagagttca 38875631  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||||||||||    
T  38875630 aaaggtcatgcataacaatgt 38875610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 13166925 - 13167044
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  |  ||||||||||||  | ||||| ||||| ||||||||||||  |||| | ||| ||||||||| |||| | ||    
T  13166925 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacatagagtcca 13167024  T
Q  199 aagggtcatgcataacaatg 218  Q
    |||||| ||||||| |||||    
T  13167025 aagggttatgcatagcaatg 13167044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 27336801 - 27336691
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||||  ||||| |||||||||||||||||  |  ||||||||||||  | ||||| |||| |||||||||||||  |||||| ||| |||    
T  27336801 aaagtggtcaaacatgagaaatcgtgttctgacaatcaacatacttttataccatttgcttttgacacttgtggcttcctagcatcagaggcagttgacc 27336702  T
Q  183 ttctacctaga 193  Q
    |||||| ||||    
T  27336701 ttctacataga 27336691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 35310556 - 35310420
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  ||||||| |||||||||||||||  |  |||||||||||   | ||||| ||||| |||||||| |||  |||||| |||||||    
T  35310556 aaagtggccaaacatgagaaagcatgttctgacaatcaacatgcttttataccatctgcttttgacactttcggcttcctggcatcagaggctgttaacc 35310457  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| | ||||||||  |||||| ||||||    
T  35310456 ttctacatagagtccaaagggttttgcatatcaatgt 35310420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 25663031 - 25663167
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||| ||||||  | |||||||||||||  | ||||| |||||  |||||||||||  ||| |  ||| | |    
T  25663031 aaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatc 25663130  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| | |||||||| ||||||| ||||||    
T  25663131 ttctacatagagtccaaagggttatgcatatcaatgt 25663167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 430686 - 430581
Alignment:
Q  107 tgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtca 206  Q
    |||||||||||||||  |  ||||||||||||  | ||||| ||||||| |||| |||||  |||||| ||| ||||||||| |||| | |||||||| |    
T  430686 tgttctgacaatcaacatgcttttataccatttgcttttgacacttttgtcttcatagcatcagaggcagttgaccttctacatagattccaaagggtta 430587  T
Q  207 tgcata 212  Q
    ||||||    
T  430586 tgcata 430581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 32269796 - 32269932
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||||  |||||| ||||||||||||||||     ||||||||||||  | ||||| ||||| |  |||||||||| |||||  ||| |||    
T  32269796 aaagtggtcaaacatgagaaagtgtgttctgacaatcaacacgcttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgacc 32269895  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||| | |  | |||||| ||||||||||| ||||||    
T  32269896 ttctgcatgaagttcaaaaggtcatgcatagcaatgt 32269932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 22188733 - 22188788
Alignment:
Q  162 tagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaat 217  Q
    |||||| |||||| ||| ||||||||| |||| |||||| ||||||||||||||||    
T  22188733 tagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaat 22188788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 35456060 - 35455974
Alignment:
Q  87 tggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagagg 173  Q
    ||||||||||  |||||||||||||| ||||||||  |  ||||||||| ||  | ||||| | ||||||||||||||||| |||||    
T  35456060 tggtcaaacatgagaaagcgtgttctaacaatcaacatgcttttataccttttgcttttgacaattttggcttcctagcaccagagg 35455974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 38146164 - 38146028
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||| | ||| | |||||| ||||||||||  | ||||||||||||| |||||||| ||||||| ||||||||||| |||||  ||| ||     
T  38146164 aaagtggtcaaacgcgagacaacgtgttttgacaatcaacatgtttttataccatttacatttgacacttttgacttcctagcaccagaggttgtttaca 38146065  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||||||||||||||||||||||    
T  38146064 ttctacttagagttcaaagggtcatgcataacaatgt 38146028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 219
Target Start/End: Complemental strand, 26772901 - 26772730
Alignment:
Q  49 cagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttga 147  Q
    |||||||||||||| |||||||| ||  |||| | ||||||| ||||||  ||||| |||||||||||||||||  |  ||||||||||||  | |||||    
T  26772901 cagtaggacatgcatccctaaaagttgtgtcaagcaaagtggccaaacatcagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttga 26772802  T
Q  148 aacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
     ||||||||||||||||||  |||||| ||| ||||||||  |||| | |||||| | ||||||||||||||    
T  26772801 cacttttggcttcctagcatcagaggcagttgaccttctatatagagtacaaaggattatgcataacaatgt 26772730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 53785814 - 53785681
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||| ||||||| |||||||||||||||||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| |||||  ||| ||||||    
T  53785814 gtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttc 53785715  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||| |||||| ||||||||||| ||||||    
T  53785714 tacatagagttcaaaaggtcatgcatagcaatgt 53785681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 52741527 - 52741647
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  |  ||||||||||||  | ||||| |||||||| |||||||||| |||||  ||| ||||||||| |||| ||||    
T  52741527 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacatagagttca 52741626  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||| ||||||    
T  52741627 aaaggtcatgcatagcaatgt 52741647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 37132998 - 37133134
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    |||||||| |||||  |||||||||||||||||||||||  | |||||||||||||    ||| | ||||| || ||| |||||| |||||  ||| |||    
T  37132998 aaagtggttaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgacc 37133097  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| ||| || ||||||||||| ||||||    
T  37133098 ttctacatagagttctaaaggtcatgcatagcaatgt 37133134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 52411910 - 52412026
Alignment:
Q  103 agcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagg 202  Q
    |||||||||||||||||||  |  |||||| |||||  | ||||| |||||  |||| ||| ||| ||| | |||| ||||||||| |||| ||||||||    
T  52411910 agcgtgttctgacaatcaacatgcttttattccatttgcttttgacactttcagctttctaacactagatgtcgttgaccttctacatagagttcaaagg 52412009  T
Q  203 gtcatgcataacaatgt 219  Q
    |||||||||||||||||    
T  52412010 gtcatgcataacaatgt 52412026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 38978827 - 38978934
Alignment:
Q  112 tgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcat 211  Q
    ||||||||||| | ||||||||| |||    ||||| |||||||| ||||||||||  ||||||||| ||||||||| || | |||||| ||| ||||||    
T  38978827 tgacaatcaatatgtttttatactatttgtttttgacacttttggtttcctagcacctgaggccgttgaccttctacatatagttcaaaaggtgatgcat 38978926  T
Q  212 aacaatgt 219  Q
    ||||||||    
T  38978927 aacaatgt 38978934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 7502010 - 7502145
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaa-tttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaac 181  Q
    ||||||||||||||  |||||||||||||  ||||||||  |  |||||||||||||  | ||||| | |||||| |||||||||| |||||  ||| ||    
T  7502010 aaagtggtcaaacatgagaaagcgtgttcgaacaatcaacatgttttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgac 7502109  T
Q  182 cttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||  ||| || ||||||||||||| ||||||||    
T  7502110 cttctac--agagtttaaagggtcatgcacaacaatgt 7502145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 32546901 - 32546774
Alignment:
Q  85 agtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacctt 184  Q
    ||||| ||||||  ||||||||||||| |||||||||  |  ||||||||||||  | ||||| |||||  | |||||||||| | |||| ||| |||||    
T  32546901 agtggccaaacatgagaaagcgtgttcggacaatcaacatacttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgacctt 32546802  T
Q  185 ctacctagaattcaaagggtcatgcata 212  Q
    |||| |||| ||||||  ||||||||||    
T  32546801 ctacatagagttcaaaaagtcatgcata 32546774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 219
Target Start/End: Original strand, 26856779 - 26856897
Alignment:
Q  101 aaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaa 200  Q
    |||||||||| ||||||||||  |  |||||||||||   | |||||  |||| |  |||||||||| |||| | ||| ||||||||| |||| ||||||    
T  26856779 aaagcgtgttgtgacaatcaacatgcttttataccatctgcttttgacgctttcgatttcctagcactagagactgttgaccttctacatagagttcaaa 26856878  T
Q  201 gggtcatgcataacaatgt 219  Q
    |||||||||||| ||||||    
T  26856879 gggtcatgcatagcaatgt 26856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 44198875 - 44198739
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||| ||||||  |  ||||||||||||  | ||||| ||||| || ||| || |||  ||||| ||| |||    
T  44198875 aaagtggccaaacatgagaaagcgtgttctgagaatcaacatgcttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgacc 44198776  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||| | ||| ||||||| ||||||    
T  44198775 ttctacatagagttcagaaggttatgcatagcaatgt 44198739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 13582617 - 13582562
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccatt 138  Q
    |||||| ||||||| ||||||| ||||||||||||||||  | |||||||||||||    
T  13582617 aaagtgatcaaacataagaaagtgtgttctgacaatcaacgtgtttttataccatt 13582562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 219
Target Start/End: Original strand, 38670885 - 38671015
Alignment:
Q  89 gtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctac 188  Q
    ||||||||  |||||||||||||||||||||||  |  |||||||| |||    ||||| ||||||||||| ||||||  |||||| | | |||||||||    
T  38670885 gtcaaacatgagaaagcgtgttctgacaatcaacatgcttttatacaatttgtttttgacacttttggctttctagcatcagaggcggatgaccttctac 38670984  T
Q  189 ctagaattcaaagggtcatgcataacaatgt 219  Q
     |||| |  |||| || ||||||| ||||||    
T  38670985 atagagtctaaagagttatgcatagcaatgt 38671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 51234680 - 51234588
Alignment:
Q  127 ttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||||| |  ||||| ||||| | ||| ||||||  |||||  ||| ||||||||| |||| |||||| ||| ||||||||||||||    
T  51234680 ttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacatagagttcaaaaggttatgcataacaatgt 51234588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 41867907 - 41868043
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||||  ||||||| |||||||||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| |||||| ||| |||    
T  41867907 aaagtggtcaaacatgagaaagcatgttctgacaatcaacatgcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgacc 41868006  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||||||||||    
T  41868007 ttctacatagagttcaaaaggtcatgcataacaatgt 41868043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 34814818 - 34814953
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    |||||| |||||||  |||||||||||||||||||||||| |  ||||||||||||  | || || ||||| || |||||| ||| |||| | ||| |||    
T  34814818 aaagtgatcaaacatgagaaagcgtgttctgacaatcaatatgcttttataccatttgctttcgacactttcgg-ttcctaacaccagagactgttgacc 34814916  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||||||||||    
T  34814917 ttctacatagagttcaaatggtcatgcataacaatgt 34814953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 4412995 - 4413194
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    ||||||||||||||||||| |   || | ||||| | |||||||| ||||||||||||  |  |||| | ||||||| ||||||  ||||||||||||||    
T  4412995 ttcaccacttgtgggattaagtgtcagaccttttaccgtaggacaggcaaccctaaaagctgtgtcaagcaaagtggccaaacatgagaaagcgtgttct 4413094  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
    |||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| ||||   ||| ||||||||| |||  |||||| |||||||||||    
T  4413095 gacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacatagggttcaaaaggtcatgcata 4413194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 2888624 - 2888519
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  ||||| |||||||||||||||||  | ||||||||||||||   | ||| ||||||||||||||| |||||||||  ||| |||    
T  2888624 aaagtggacaaacatgagaaaacgtgttctgacaatcaacatgtttttataccattcgtttatgacacttttggcttcctaacacaagaggttgttgacc 2888525  T
Q  183 ttctac 188  Q
    ||||||    
T  2888524 ttctac 2888519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 17344743 - 17344610
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||| ||||||| ||||| |||||| | ||||||||  |  ||||||||||||  | ||||| |||||  | |||||||||| | |||| ||| ||||||    
T  17344743 gtggccaaacacgagaaaacgtgttttcacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttc 17344644  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||| |||||| ||||||||||||||||||    
T  17344643 tacatagagttcaaaaggtcatgcataacaatgt 17344610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 5532560 - 5532393
Alignment:
Q  51 gtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaa 149  Q
    |||||||||||| ||||||||  |  |||| | ||||||||||||||  ||||| |||||| ||||||||||  |  |||||||| ||| || ||||| |    
T  5532560 gtaggacatgcagccctaaaagctgcgtcaagcaaagtggtcaaacatgagaaaacgtgttgtgacaatcaacatgcttttatactatttacttttgaca 5532461  T
Q  150 cttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatg 218  Q
    |||| | ||||||||||| | |||  ||| | ||||||| |||| |||||||||||||||| |||||||    
T  5532460 ctttag-cttcctagcaccataggttgttgagcttctacatagagttcaaagggtcatgcacaacaatg 5532393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 10579823 - 10579911
Alignment:
Q  128 tttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaa 216  Q
    |||||||||||  | ||||| ||||||||||||||  ||| |||| ||||| ||||||||| ||||| ||||||||| |||||||||||    
T  10579823 tttataccatttgcgtttgacacttttggcttcctgtcactagagaccgttgaccttctacatagaactcaaagggttatgcataacaa 10579911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 9685414 - 9685550
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  | |||||||||||||||||||||  |  ||||||||||||  | ||||| |||||||  || ||||||| |||||| ||  |||    
T  9685414 aaagtggccaaacatgaaaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttgattttctagcactagaggctgtggacc 9685513  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||  |||| |||||| ||||||| ||| ||||||    
T  9685514 ttctatatagagttcaaaaggtcatggatagcaatgt 9685550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 19161782 - 19161918
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  | |||||||||||||||||||||  | |||||||||||||  | ||||| ||||| || ||  || ||| |||||| | | |||    
T  19161782 aaagtgggcaaacatgaaaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacactttcggttttgtaacactagaggctgcttacc 19161881  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    || ||| |||| |||||| ||||||||||| ||||||    
T  19161882 ttttacatagagttcaaaaggtcatgcatatcaatgt 19161918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 18744956 - 18745089
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||| ||||||| |||||||||||||||||||||||  |  ||||||||||||  | ||||| | ||| |  || ||||||| | |||| |||  |||||    
T  18744956 gtggccaaacacgagaaagcgtgttctgacaatcaacatacttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttc 18745055  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||| |||||| | ||||||||| ||||||    
T  18745056 tacatagagttcaaaagatcatgcatagcaatgt 18745089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 13413373 - 13413323
Alignment:
Q  169 agaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| ||| ||||||||| |||| |||||| ||||||||||||||||||    
T  13413373 agaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgt 13413323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 28225092 - 28224974
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    ||||||||| |||||||||||||  |  ||||||||||||  | ||||| ||||| |||||||||||   |||||  ||| ||||||||| |||| | ||    
T  28225092 agaaagcgtattctgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacatagagtcca 28224993  T
Q  199 aagggtcatgcataacaat 217  Q
    |||| | |||||| |||||    
T  28224992 aaggattatgcatgacaat 28224974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 120
Target Start/End: Original strand, 13147096 - 13147133
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatca 120  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  13147096 aaagtggtcaaacatgagaaagcgtgttctgacaatca 13147133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 44684955 - 44684991
Alignment:
Q  181 ccttctacctagaattcaaagggtcatgcataacaat 217  Q
    |||||||| |||| |||||||||||||||||||||||    
T  44684955 ccttctacatagagttcaaagggtcatgcataacaat 44684991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 38815402 - 38815266
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||||||||||  |  ||||||||||||  | ||||| |||||  |||||||||||| |||||  ||| |||    
T  38815402 aaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgacc 38815303  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||||||||||||||| ||||||    
T  38815302 ttctacatagagttcaaagggtcatgcatagcaatgt 38815266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 3188058 - 3187942
Alignment:
Q  102 aagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaag 201  Q
    ||||||||||||||||||||  |  ||||||||||||  | ||||||||||| ||||||||||||  |||||  ||||||||||||| ||| | ||||||    
T  3188058 aagcgtgttctgacaatcaacatgcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacatag-agtcaaag 3187960  T
Q  202 ggtcatgcataacaatgt 219  Q
    ||| ||||||| ||||||    
T  3187959 ggttatgcatagcaatgt 3187942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 25021743 - 25021949
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    ||||||||||||||||||||||  | |   |||| ||||| ||||| || |||||||| ||  |||| | |||||||| ||| |  |||||| |||||||    
T  25021743 ttcaccacttgtgggattaggggtcgatgtttttacagtatgacatacagccctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgttct 25021842  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
     ||||||||  | |||||||||||||  | ||||| | ||||||||||||||||| |||||  ||| ||| || ||  | | |||||||||||||||| |    
T  25021843 cacaatcaacatgtttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgaccatccacacaaagttcaaagggtcatgcaca 25021942  T
Q  213 acaatgt 219  Q
    |||||||    
T  25021943 acaatgt 25021949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 35739985 - 35740121
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||| ||||||||||||||  | ||||||||| |||  | ||||| |||||  | |||||||||| ||||   ||| |||    
T  35739985 aaagtggccaaacatgagaaagcgggttctgacaatcaacatgtttttatacaattagcttttgacactttcagtttcctagcaccagagattgttgacc 35740084  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| ||||||  |||||||||||||||||    
T  35740085 ttctacatagagttcaaaaagtcatgcataacaatgt 35740121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 39434775 - 39434639
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||||||||||  |  ||||||||||||    ||||| ||||||| ||||||||||  ||||||  || | |    
T  39434775 aaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgtttttgacacttttgacttcctagcatcagaggcatttgatc 39434676  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| | |||||||| ||||||| ||||||    
T  39434675 ttctacatagagtccaaagggttatgcatatcaatgt 39434639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 166251 - 166133
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||  ||  | |||| |||| ||| || ||||||| ||||||||||||||||| | || ||||| ||||| ||   ||||||||    
T  166251 agaaagcgtgttctgacaacaaacatattttcatactatttacgtttgaaatttttggcttcctagcaccatagaccgttgaccttttaaaaagaattca 166152  T
Q  199 aagggtcatgcataacaat 217  Q
    |||  ||||||||||||||    
T  166151 aagactcatgcataacaat 166133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 18804654 - 18804584
Alignment:
Q  149 acttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||  |||||||||| |||||| ||| ||||||||| |||| |||||| ||||||||||||||||||    
T  18804654 acttttgatttcctagcaccagaggctgttgaccttctacatagatttcaaaaggtcatgcataacaatgt 18804584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 10189651 - 10189562
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagag 172  Q
    ||||| ||||||||  ||||||| |||||||||||||||  | |||||||| ||||  ||||||| | ||||||||||||||||| ||||    
T  10189651 aaagtagtcaaacaagagaaagcatgttctgacaatcaacatgtttttatatcatttgcatttgacatttttggcttcctagcactagag 10189562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 24125120 - 24125000
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||| ||||||||||||  |  ||||||||||||  | ||||| | |||||  |||||||||| |||||  |||  |||||||| || | ||||    
T  24125120 agaaagcgtgctctgacaatcaacatgcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataaagttca 24125021  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||| ||||||    
T  24125020 aaaggtcatgcatagcaatgt 24125000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 6592683 - 6592554
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||| ||||||||  |  ||||| ||||||  | ||||| |||||  | |||||||| | |||||  ||| |||    
T  6592683 aaagtggccaaacatgagaaagcgtgttctcacaatcaacatgattttaaaccatttgcttttgacactttcagtttcctagctccagaggttgttgacc 6592584  T
Q  183 ttctacctagaattcaaagggtcatgcata 212  Q
    |||| | |||| |||||| |||||||||||    
T  6592583 ttctgcatagagttcaaaaggtcatgcata 6592554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 28196257 - 28196164
Alignment:
Q  126 tttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||||||    ||||| ||||||| ||||||||||| | |||  ||| ||| ||||| |||| |||||||| ||||||| ||||||||    
T  28196257 tttttataccatttgtttttgacacttttgtcttcctagcaccataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgt 28196164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 37514254 - 37514193
Alignment:
Q  158 ttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||| | |||||| ||| ||||||||| |||| |||||| ||||||||||| ||||||    
T  37514254 ttcctagcgccagaggctgttgaccttctacatagagttcaaaaggtcatgcatatcaatgt 37514193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 40223477 - 40223538
Alignment:
Q  158 ttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||  ||||  ||| ||||||||| |||| |||||| ||||||||||||||||||    
T  40223477 ttcctagcaccggaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgt 40223538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 43824054 - 43823961
Alignment:
Q  126 tttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||||||  | ||||| |||||||||||||| |||  ||||||  || |||||  || |||| |||||| ||||||||||| ||||||    
T  43824054 tttttataccatttgcttttgacacttttggcttccttgcattagaggctattgacctttcacatagagttcaaatggtcatgcatagcaatgt 43823961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 3863381 - 3863289
Alignment:
Q  127 ttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||||  ||| ||| |||||||||||||||| || |||||   || ||||||||| |||| ||||||||||  |||||| ||||||    
T  3863381 ttttattccatttgcatgtgacacttttggcttcctaggaccagaggttattgaccttctacatagagttcaaagggtagtgcatagcaatgt 3863289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39671243 - 39671307
Alignment:
Q  155 ggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||||| |||||  ||||||||| ||| |||| || ||||||||||| |||| |||||    
T  39671243 ggcttcctagcaccagaggttgttaaccttttacgtagagttaaaagggtcatgaataaaaatgt 39671307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 38731701 - 38731581
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  |  |||||||| |||  | |||||||||||||||||| |||||| |||||  ||||||||||||| |||| ||||    
T  38731701 agaaagcgtgttctgacaatcaacatacttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgttaaccttctacatagagttca 38731602  T
Q  199 aagggtcatgcataacaatgt 219  Q
    |||||||||||| || |||||    
T  38731601 aagggtcatgcacaataatgt 38731581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 28041126 - 28041262
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||| ||||||||||||||||    |||||||||||||  | ||||| ||||| || |||||||||| |||||| ||| |||    
T  28041126 aaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgacc 28041225  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||| ||||||    
T  28041226 ttctacatagagttcaaaaggtcatgcatagcaatgt 28041262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 29169795 - 29169928
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||| ||||||| ||||| |||||||||||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| |||||  ||||||||||    
T  29169795 gtggccaaacacgagaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttc 29169894  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||| |||||| ||||||||| | ||||||    
T  29169895 tacatagagttcaaaaggtcatgcacagcaatgt 29169928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 21473095 - 21472975
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  | |||||||||||||  | ||||| ||||   | |||||||||| |||||| ||| ||||||||| |||| ||||    
T  21473095 agaaagcgtgttctgacaatcaacatgtttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttctacatagagttca 21472996  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||| ||||||    
T  21472995 aaaggtcatgcatagcaatgt 21472975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 37200166 - 37200035
Alignment:
Q  8 tgatgcttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcg 106  Q
    ||||| ||||||||| ||||||||| || ||  | ||||| || ||||||||||| || ||||| ||| |||| | |||||||||||||| ||||||||     
T  37200166 tgatgtttcaccactcgtgggattaaggaccggagcttttacaataggacatgcagccataaaagttacgtcaagtaaagtggtcaaacataagaaagca 37200067  T
Q  107 tgttctgacaatcaatttctttttataccatt 138  Q
    ||| || ||||||||| | |||||||||||||    
T  37200066 tgtgctaacaatcaatatgtttttataccatt 37200035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 2898789 - 2898676
Alignment:
Q  103 agcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagg 202  Q
    ||||||||||||||||||||   |||||||||||||  | ||||| ||||| || |||||||||| |||||  ||| ||||||||| |||| |||||| |    
T  2898789 agcgtgttctgacaatcaatag-tttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaag 2898691  T
Q  203 gtcatgcataacaat 217  Q
     ||||||||||||||    
T  2898690 atcatgcataacaat 2898676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 212
Target Start/End: Original strand, 20259812 - 20259925
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  | ||||||||||||| |   |||| ||||| || ||| |||||| |||||  ||| ||||||||| |||| ||||    
T  20259812 agaaagcgtgttctgacaatcaacatgtttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttctacatagagttca 20259911  T
Q  199 aagggtcatgcata 212  Q
    || |||||||||||    
T  20259912 aaaggtcatgcata 20259925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 34644744 - 34644538
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    ||||||||||||||| ||||||  |    ||||| | |||||||| |||||||||||| ||  ||||   ||||||| ||||||  ||||||||||||||    
T  34644744 ttcaccacttgtgggtttaggggtcggggcttttacggtaggacaagcaaccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagcgtgttct 34644645  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
    ||||| | |  |  ||||||||||||    ||||| ||||| ||||||||||||  |||||  ||| ||||||||| |||| | |||||||| |||||||    
T  34644644 gacaacctacatgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacatagagtccaaagggttatgcata 34644545  T
Q  213 acaatgt 219  Q
     ||||||    
T  34644544 tcaatgt 34644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 219
Target Start/End: Original strand, 45659650 - 45659781
Alignment:
Q  86 gtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttc 185  Q
    |||| ||||||| |||||||||||||||||||||||  |  ||||||||||||  | ||||| ||||| |  |||||| ||| |||||| ||| ||||||    
T  45659650 gtggccaaacacgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttc 45659749  T
Q  186 tacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||  |||| |||||| | ||||||||| ||||||    
T  45659750 ta--tagagttcaaaagatcatgcatagcaatgt 45659781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 19035555 - 19035464
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggc 174  Q
    ||||||| ||||||  |||||||||||||||||||||||  |  |||||||||||| || ||||| ||||  || |||||||||| ||||||    
T  19035555 aaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttacttttgacacttacggtttcctagcaccagaggc 19035464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 4861992 - 4862124
Alignment:
Q  87 tggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttct 186  Q
    ||||||||||  ||||||||| ||||||||| |||  |  |||||||| |||  | ||||| ||||| |  |||||| ||| | | |  ||| |||||||    
T  4861992 tggtcaaacatgagaaagcgtcttctgacaagcaacatacttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttct 4862091  T
Q  187 acctagaattcaaagggtcatgcataacaatgt 219  Q
    || |||| |||||||||||||||||||||||||    
T  4862092 acatagagttcaaagggtcatgcataacaatgt 4862124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 37932147 - 37932254
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtc-aggaaagtggtcaaacacaagaaagcgtgttct 112  Q
    |||||||||||||||||||||| ||||  ||||| ||||| ||||  || |||||||| ||  ||| || ||| |||||||| || |||||| |||||||    
T  37932147 ttcaccacttgtgggattaggggccaaggcttttacagtaagacagacagccctaaaagttgtgtcaagcaaaatggtcaaatacgagaaag-gtgttct 37932245  T
Q  113 gacaatcaa 121  Q
    |||||||||    
T  37932246 gacaatcaa 37932254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 36486994 - 36486944
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttata 133  Q
    |||||||||||| |  |||||||||||| ||||||||||| ||||||||||    
T  36486994 aaagtggtcaaatatgagaaagcgtgttttgacaatcaatatctttttata 36486944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 47459747 - 47459654
Alignment:
Q  126 tttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||||||  | ||||| |||||||||||||||| |  |||||| ||| ||||||||| |||| | ||||||   ||||||| ||||||    
T  47459747 tttttataccatttgcttttgatacttttggcttcctagtatcagaggcagttgaccttctacatagagtccaaaggaatatgcatagcaatgt 47459654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 2764587 - 2764451
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||||  ||||| ||||||| |||||||||  |  |||||| |||||  | ||||| |||||  |||||||||||  |||||  ||| |||    
T  2764587 aaagtggtcaaacatgagaaaacgtgttccgacaatcaacatgcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgacc 2764488  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| || | | |||||||| ||||| | ||||||    
T  2764487 ttctacataaagtccaaagggttatgcaaatcaatgt 2764451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 24177526 - 24177646
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||| |||| | |||||||||  | |||||||||||||    ||||| | ||| || |||||||||  |||||| ||| ||||||||| |||| ||||    
T  24177526 agaaagtgtgtaccgacaatcaacatatttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacatagagttca 24177625  T
Q  199 aagggtcatgcataacaatgt 219  Q
    ||  |||||||||| ||||||    
T  24177626 aaaagtcatgcatagcaatgt 24177646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 50161346 - 50161454
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    ||||||||| |||| ||||||| |  | |||||| | ||||||||  ||||||||||| ||  |||| | ||||||| ||||||  ||||||||||||||    
T  50161346 ttcaccactcgtggaattaggggctgagacttttacggtaggacagacaaccctaaaagttgcgtcaagcaaagtggacaaacatgagaaagcgtgttct 50161445  T
Q  113 gacaatcaa 121  Q
     ||||||||    
T  50161446 cacaatcaa 50161454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 27521579 - 27521443
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||||||||||  ||||| |||||||||||||||||  |   ||||||| ||| || ||||| |||||||| |||||||||  |||||  ||| |||    
T  27521579 aaagtggtcaaacatgagaaaacgtgttctgacaatcaacatgcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgacc 27521480  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||||||||||    
T  27521479 ttctacatagagttcaaaaggtcatgcataacaatgt 27521443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 19277471 - 19277265
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    |||||||||||| ||||||||   || | ||||||| |||||||| |||  |||||||  |  |||| | ||||| | ||||||  ||||||||||||||    
T  19277471 ttcaccacttgtcggattaggtttcagaccttttgccgtaggacaggcagtcctaaaagctgcgtcaagcaaagtagccaaacatgagaaagcgtgttct 19277372  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
    |||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| |||||  ||| ||||||||| |||| |||||| |||||||||||    
T  19277371 gacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaaggtcatgcata 19277272  T
Q  213 acaatgt 219  Q
     ||||||    
T  19277271 gcaatgt 19277265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 28517245 - 28517422
Alignment:
Q  43 cttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcac 141  Q
    ||||| ||||||||||  |||||||||||  |  |||| | ||||||| ||||||  ||||||||||||  |||||||||  | |||||||||||||  |    
T  28517245 cttttacagtaggacagacaaccctaaaagctgcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatttgc 28517344  T
Q  142 atttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
     ||||| ||||||| ||||||||||  |||| | ||| ||||||||| |||| | |||||||| ||||||||||||||    
T  28517345 ttttgacacttttgacttcctagcatcagagacagttgaccttctacatagagtccaaagggttatgcataacaatgt 28517422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 21326837 - 21326973
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||||||||||||||  |  ||||||||||||  | ||||| ||||| |  |||||||||| |||||| ||| |||    
T  21326837 aaagtggccaaacatgagaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgacc 21326936  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    || ||| |||| |||||| ||||||||||| ||||||    
T  21326937 ttttacatagagttcaaaaggtcatgcatagcaatgt 21326973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 24527681 - 24527561
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    ||||| |||||||||||||||||  |  ||||||||||||  | ||||| |||||  | |||||||||| |||||| ||| ||||||||| |||| ||||    
T  24527681 agaaaacgtgttctgacaatcaacatgcttttataccatttgcttttgacactttcagtttcctagcacgagaggcggttgaccttctacatagagttca 24527582  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||| ||||||    
T  24527581 aaaggtcatgcatagcaatgt 24527561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 45613849 - 45613977
Alignment:
Q  91 caaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacct 190  Q
    |||||||  ||||| ||||||||||||||||  | |||||||||||||    ||||| ||||| || |||| ||||| |||||| |||| |||||||| |    
T  45613849 caaacacgggaaagtgtgttctgacaatcaacatgtttttataccatttgattttgacactttcggtttccaagcaccagaggctgttagccttctacat 45613948  T
Q  191 agaattcaaagggtcatgcataacaatgt 219  Q
    ||| |||||| | ||||||||||||||||    
T  45613949 agagttcaaaagttcatgcataacaatgt 45613977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 983057 - 982921
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  ||||| |||||||||||||||||  |  ||||||||||||  | ||||| ||||| || || ||||||| |||||  |||  ||    
T  983057 aaagtggccaaacatgagaaatcgtgttctgacaatcaacatgcttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggcc 982958  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||| ||||||    
T  982957 ttctacatagagttcaaaaggtcatgcatatcaatgt 982921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 219
Target Start/End: Complemental strand, 5825360 - 5825245
Alignment:
Q  104 gcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaaggg 203  Q
    ||||||| ||||||||||  | ||||||||||||| || ||||| ||||| ||| ||||||||| |||||  ||| ||||||||| |||| |  ||||||    
T  5825360 gcgtgttatgacaatcaacatgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacatagagtcgaaaggg 5825261  T
Q  204 tcatgcataacaatgt 219  Q
    | ||||||| ||||||    
T  5825260 ttatgcatagcaatgt 5825245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 218
Target Start/End: Original strand, 40726479 - 40726614
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| |||||| || |||  ||||||||||||||||  | |||||||||||||    ||||| ||||| |||||| |||||  |||||  ||| |||    
T  40726479 aaagtggccaaacataataaaatgtgttctgacaatcaacatgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgacc 40726578  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatg 218  Q
    |||||| |||| | |||||||| |||||||||||||    
T  40726579 ttctacatagagtccaaagggttatgcataacaatg 40726614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 43856966 - 43856846
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||| ||||||||||  |   ||||||| |||  | ||||| | |||||| |||||| ||| |||||  ||| ||||||||| |||| ||||    
T  43856966 agaaagcgtgttttgacaatcaacatgcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacatagagttca 43856867  T
Q  199 aagggtcatgcataacaatgt 219  Q
    |||||||||||| ||||||||    
T  43856866 aagggtcatgcacaacaatgt 43856846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 219
Target Start/End: Complemental strand, 32584742 - 32584572
Alignment:
Q  51 gtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaa 149  Q
    ||||||||||||||||||||||||   |||   ||||||||||||||  ||||| |||||||||||||||||  |  ||||| ||||||  | ||||| |    
T  32584742 gtaggacatgcaaccctaaaaattgcatcaaacaaagtggtcaaacatgagaaaacgtgttctgacaatcaagatgcttttacaccatttgcttttgaca 32584643  T
Q  150 cttttggcttcctagcacaagaggccgttaaccttctacctagaatt-caaagggtcatgcataacaatgt 219  Q
    ||||  | |||||||||| |||||  ||| ||||||||  |||| || |||| | ||||||||| ||||||    
T  32584642 ctttatgtttcctagcaccagaggttgttgaccttctagatagagttccaaaagatcatgcatatcaatgt 32584572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 9281146 - 9281255
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||| ||||||||  |  |||||||| |||   |||||| | |||| |||||||||||| ||| |  ||| ||||||||| |||| ||||    
T  9281146 agaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacatagagttca 9281245  T
Q  199 aagggtcatg 208  Q
    ||||||||||    
T  9281246 aagggtcatg 9281255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 208
Target Start/End: Original strand, 9292117 - 9292226
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||| ||||||||  |  |||||||| |||   |||||| | |||| |||||||||||| ||| |  ||| ||||||||| |||| ||||    
T  9292117 agaaagcgtgttctaacaatcaacatgcttttatactatttggatttgacattttttgcttcctagcaccagatgttgttgaccttctacatagagttca 9292216  T
Q  199 aagggtcatg 208  Q
    ||||||||||    
T  9292217 aagggtcatg 9292226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 10905181 - 10905090
Alignment:
Q  128 tttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||||||||  | ||||| |||||||| | |||||||| ||||   ||| ||||||||| |||| ||||||| | |||||||||||||||    
T  10905181 tttataccatttgcttttgacacttttggttgcctagcaccagagtatgttgaccttctacatagagttcaaagagccatgcataacaatgt 10905090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 10032193 - 10032299
Alignment:
Q  106 gtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtc 205  Q
    ||||||||||||||||| | ||||||||| |||  | ||||| | |||  ||||| |||||  ||| |  ||||||||||||| |||| |||||||| ||    
T  10032193 gtgttctgacaatcaatatgtttttatactatttgcttttgatattttcagcttcttagcattagatgttgttaaccttctacatagagttcaaaggatc 10032292  T
Q  206 atgcata 212  Q
    |||||||    
T  10032293 atgcata 10032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 3676747 - 3676675
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttg 155  Q
    ||||||||||||||  |||||||||||||| || |||||| |  ||||||||||||  | ||||| |||||||    
T  3676747 aaagtggtcaaacatcagaaagcgtgttcttactatcaatatgcttttataccatttgcttttgacacttttg 3676675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 45424767 - 45424843
Alignment:
Q  143 tttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||| | ||||||||||| ||| ||| || |||||||||  | |||||||||| || || ||||||||||    
T  45424767 tttgaaactttcgacttcctagcaccagatgcccttgaccttctacacataattcaaaggatcgtgtataacaatgt 45424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 6511 - 6306
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    |||||||||||||||||||||| |  |  ||||| | ||||||||  || |||||||| ||  |||| | ||||||| ||||||  ||||||||||||||    
T  6511 ttcaccacttgtgggattagggtcggac-cttttaccgtaggacagacagccctaaaagttgcgtcaagtaaagtggccaaacatgagaaagcgtgttct 6413  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
    |||||||||  |  || |||||||||  | ||||| |||||  | |||||||||| |||||| ||| ||||||||| |||| |||||| |||||||||||    
T  6412 gacaatcaacatgcttctataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcata 6313  T
Q  213 acaatgt 219  Q
     ||||||    
T  6312 gcaatgt 6306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 33342 - 33224
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  | ||||||||||||| || ||||| | ||| || |||||| ||| |||||  ||| ||||||||| |||| ||||    
T  33342 agaaagcgtgttctgacaatcaacatgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacatagagttca 33243  T
Q  199 aagggtcatgcataacaat 217  Q
    || ||||||||||| ||||    
T  33242 aaaggtcatgcatagcaat 33224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 4206525 - 4206731
Alignment:
Q  14 ttcaccacttgtgggattagggcccaaaacttttgcagtaggacatgcaaccctaaaaattaagtcagg-aaagtggtcaaacacaagaaagcgtgttct 112  Q
    |||||||||||||||||||||   || | ||||| | |||||||||||| || ||||| |   |||| | |||||||  |||||  ||||||||||||||    
T  4206525 ttcaccacttgtgggattaggcatcagaccttttacggtaggacatgcagccttaaaagtggcgtcaagcaaagtggctaaacatgagaaagcgtgttct 4206624  T
Q  113 gacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcata 212  Q
    |||||| ||  |  ||||||| ||||  | ||||| ||||| || |||||||||| |||||  ||| ||||||||| |||| |||||| ||||||||||     
T  4206625 gacaatgaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacatagagttcaaaaggtcatgcatg 4206724  T
Q  213 acaatgt 219  Q
    |||||||    
T  4206725 acaatgt 4206731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 17249304 - 17249440
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||| ||||||||||||||||  |  ||||||||||||  | ||||| ||||||||||||||||||  |||||| ||| |||    
T  17249304 aaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgacc 17249403  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| | |||||| | ||| ||| ||||||    
T  17249404 ttctacatagagtccaaaggattatgtatagcaatgt 17249440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 45676 - 45812
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    |||||| |||||||  ||||| |||||||||||||||||  |  |||||| |||||    ||||| ||||| || ||| |||||| |||||| ||| |||    
T  45676 aaagtgatcaaacatgagaaaacgtgttctgacaatcaacatgcttttattccatttgtttttgacactttcggtttcttagcaccagaggctgttgacc 45775  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| |||| |||||| ||||||||||| ||||||    
T  45776 ttctacatagagttcaaaaggtcatgcatagcaatgt 45812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 4165937 - 4166057
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  |  ||||||| ||||  | ||||| ||||| || |||||||||| |||||  ||| ||||||||| |||| || |    
T  4165937 agaaagcgtgttctgacaatcaacatgcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacatagagttta 4166036  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || |||||||||| |||||||    
T  4166037 aaaggtcatgcatgacaatgt 4166057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 34304588 - 34304470
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||||||||||  |  ||||||||||||  | ||||| ||||| ||||||||||||  ||| |  ||| ||||||||| |||| | ||    
T  34304588 agaaagcgtgttctgacaatcaacatgcttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttctacatagagtcca 34304489  T
Q  199 aagggtcatgcataacaat 217  Q
    ||| || ||||||| ||||    
T  34304488 aagagttatgcatagcaat 34304470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 34554292 - 34554410
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    |||||||||||||||| ||||||  | ||||||||||||| || ||||| || || ||||||||||||| ||| ||  || || |||||| |||| || |    
T  34554292 agaaagcgtgttctgataatcaagatgtttttataccatttacttttgacacattcggcttcctagcaccagatgctattgactttctacatagagttta 34554391  T
Q  199 aagggtcatgcataacaat 217  Q
    || ||||||| ||| ||||    
T  34554392 aaaggtcatgtatagcaat 34554410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 33220710 - 33220846
Alignment:
Q  83 aaagtggtcaaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaacc 182  Q
    ||||||| ||||||  |||||||||||  ||||||||||  |  ||||||||||||  | ||||| ||||| ||||||||||||   ||||  ||| |||    
T  33220710 aaagtggccaaacatgagaaagcgtgtgttgacaatcaacatgcttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgacc 33220809  T
Q  183 ttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    |||||| || | | |||||||| ||||||| ||||||    
T  33220810 ttctacatatagtccaaagggttatgcatagcaatgt 33220846  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 959672 - 959553
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    ||||| |||||||||||||||||  | | |||||||||||    ||||| | ||| || |||||||||| |||||  ||| ||||||||| || | ||||    
T  959672 agaaaacgtgttctgacaatcaacatgtctttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttctacgta-agttca 959574  T
Q  199 aagggtcatgcataacaatgt 219  Q
    || ||||||||||| ||||||    
T  959573 aaaggtcatgcatagcaatgt 959553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 29338094 - 29338214
Alignment:
Q  99 agaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattca 198  Q
    ||||| |||||||| ||||||||  |  | ||||||||||  | ||||| |||| || ||||||||||| ||||  |||| ||||||||| ||   ||||    
T  29338094 agaaaacgtgttctaacaatcaacatgctcttataccatttgcttttgacacttctgacttcctagcaccagagatcgttgaccttctacatatggttca 29338193  T
Q  199 aagggtcatgcataacaatgt 219  Q
    |||||||||||| | ||||||    
T  29338194 aagggtcatgcacatcaatgt 29338214  T

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Target: scaffold0009 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 103205 - 103078
Alignment:
Q  91 caaacacaagaaagcgtgttctgacaatcaatttctttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacct 190  Q
    ||||||| ||||||||||| |||||||||||  |  ||||||||||||  | ||||| ||||| || |||||||||| |||||| ||| ||||||||| |    
T  103205 caaacacgagaaagcgtgt-ctgacaatcaacatgcttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacat 103107  T
Q  191 agaattcaaagggtcatgcataacaatgt 219  Q
     ||  ||||| ||||||||||||||||||    
T  103106 cgagctcaaaaggtcatgcataacaatgt 103078  T

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Target: scaffold0186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 10424 - 10333
Alignment:
Q  127 ttttataccattcacatttgaaacttttggcttcctagcacaagaggccgttaaccttctacctagaattcaaagggtcatgcataacaatgt 219  Q
    ||||||||||||  | ||||| |||| |||||||||||||| |||||  ||| ||||||||  |||| || |||||| |||||||||||||||    
T  10424 ttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttcta-atagagttgaaagggccatgcataacaatgt 10333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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