View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_low_3 (Length: 579)
Name: NF15669_low_3
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 22 - 573
Target Start/End: Complemental strand, 31682444 - 31681892
Alignment:
| Q |
22 |
aaatagtaattaggaaacatagagctcttttctttccaatacgaagggctaagtagaggcaagagctgtcatctcatgcatccggataaacttaaatgtt |
121 |
Q |
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| T |
31682444 |
aaatagtaattaggaagcaaagagctcctttctttccaatacgaagggctaagtagaggcaagagctgtcatctcatgcatccggataaacttaaatgtt |
31682345 |
T |
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| Q |
122 |
tgtcggctacacgacatgaagtttgaccaagtgcatgatatgagagcaactccacccatctgcttagtcctaccattggattgaagggagttctatgttt |
221 |
Q |
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| T |
31682344 |
tgtcggctacacgacatgaagtttgaccaagtgcatgatatgagagcaactccacctttctgcttagtcctaccattggattgaagggagttctatgttt |
31682245 |
T |
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| Q |
222 |
cactttaatgtttttctttcatcatgggtgaatgaattcagttgctgttttatgctctttgaacaggtttgtttctctctcattcttgtgattaggaggt |
321 |
Q |
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| T |
31682244 |
cactttaatgtttttctttcatcatgggtgaatgaattcagttgctgttttatgctctttgaacaggtttgtttctctctcattcttgtgattaggaggt |
31682145 |
T |
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| Q |
322 |
ttactttttacttttgttatcatgtttatatgtgcagattttcaagctttgtatgataaaccaagagtcttccaacaacactgcatcatgtgtttgcttt |
421 |
Q |
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| T |
31682144 |
ttactttttacttttgttatcatgtttatatgtgcagattttcaagctttgtatgataaaccaagagtcttccaacaacactgcatcatgtgtttgcttt |
31682045 |
T |
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| Q |
422 |
gccggatcccctgctgtaggaaaaagacatctttacaggcattaaacaatattgacagttaatttgagattggacggctcatattactcggtgcaaaatc |
521 |
Q |
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| T |
31682044 |
gccggattccctgctgtaggaaaaagacatctttacatgcattaaacaatattgacagttaatttgagattggacggctcatattactcggtgcaaaatc |
31681945 |
T |
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| Q |
522 |
aataagtggtagaaagtctgcatgtttcgtgttcgacacc-gacacatataat |
573 |
Q |
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| T |
31681944 |
aataagtggtagaaagtctgcatgtttcgtgttcgacaccagacacatataat |
31681892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 550 - 579
Target Start/End: Original strand, 15874197 - 15874226
Alignment:
| Q |
550 |
gtgttcgacaccgacacatataattacatt |
579 |
Q |
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| T |
15874197 |
gtgttcgacaccgacacatataattacatt |
15874226 |
T |
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