View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_low_5 (Length: 345)
Name: NF15669_low_5
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_low_5 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 60 - 320
Target Start/End: Complemental strand, 8877826 - 8877570
Alignment:
| Q |
60 |
gattttcagaaatttaaattgagatataaacaagcagtcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaa |
159 |
Q |
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| T |
8877826 |
gattttcagaaatttaaattgagatataaacaagcattcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaa |
8877727 |
T |
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| Q |
160 |
catgttactaagttacaagaagcataccattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccagg |
259 |
Q |
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| T |
8877726 |
catgttactaagttacaagcagcataccattcatgattacatattgtgcgatccagccttctttgaatgtgaaatctactacttctgccattggaccagg |
8877627 |
T |
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| Q |
260 |
tatagctatctagaacctcttgttcgaatatgaatgagattattggaatttgtccactctt |
320 |
Q |
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| T |
8877626 |
tatag----ctagaacctcttgtgtgaatatgaatgagattattggaattagtccaatctt |
8877570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8883447 - 8883385
Alignment:
| Q |
1 |
atgaattgagtgttccaacaattcttcactatgttaatacaattaggatgtgaaatccagatt |
63 |
Q |
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| T |
8883447 |
atgaattgagtgttccaacaattcttcactatgttaatacaattaggatgtgaaatccagatt |
8883385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 22136356 - 22136171
Alignment:
| Q |
72 |
tttaaattgagatataaacaagcagtcatcatttttgaattctaacaataaagggtaatggttagacctaagcttagtgagggtagaacatgttactaag |
171 |
Q |
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| T |
22136356 |
tttaaattgagagacaaagagacagtcaccatttttaaattctagaaggatagggaaatggtaagatctaagctttgtgagagttgaataggttacaaag |
22136257 |
T |
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| Q |
172 |
ttacaagaagcataccattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggacca |
257 |
Q |
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| T |
22136256 |
ttacaagcaacataccattcctggttacaaattgttctatcaagccttttttgaatgtggaatctacctcttctcccattggacca |
22136171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 261
Target Start/End: Complemental strand, 12301840 - 12301764
Alignment:
| Q |
185 |
accattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccaggta |
261 |
Q |
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| T |
12301840 |
accattcttgattacatatggctctatcaagtcttctttgaatgtgaaatttaccccttcttccatttgaccaggta |
12301764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 38243 - 38319
Alignment:
| Q |
185 |
accattcatgattacatattgcgcgatcctgccttctttgaatgtgaaatctactacttctgccattggaccaggta |
261 |
Q |
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| T |
38243 |
accattcttgattacatatggctctatcaagtcttctttgaatgtgaaatttaccccttcttccatttgaccaggta |
38319 |
T |
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