View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15669_low_8 (Length: 318)
Name: NF15669_low_8
Description: NF15669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15669_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 43285481 - 43285430
Alignment:
| Q |
199 |
catgccttggtgtcagatatacccacgtgaggcctcactgccacccccatgt |
250 |
Q |
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| T |
43285481 |
catgccttggtgtcagatatacccacgtgaggcctcactgccacccccatgt |
43285430 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 43285645 - 43285604
Alignment:
| Q |
35 |
agtatataatgatgataaatataaaccccctcgtgcatatcc |
76 |
Q |
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| T |
43285645 |
agtatataatgatgataaatataaaccccctcgtgcatatcc |
43285604 |
T |
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