View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1566_high_19 (Length: 307)
Name: NF1566_high_19
Description: NF1566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1566_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 28820379 - 28820086
Alignment:
| Q |
14 |
ttctcaaataccaacgcaagggacacaaaatcccgtgattcatggtaatcgtctgcgatatgtccacttattttaagttgttaaacaatactcagcctcg |
113 |
Q |
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| T |
28820379 |
ttctcaaataccaacgcaagggacacaaaatcccgtgattcatggtaatcgtctgcgacatgtccacttattttaagttgttaaacaatactcagcctca |
28820280 |
T |
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| Q |
114 |
catatagaaagnnnnnnngcatagtgtcatatattataaactattgagtttattgaaatccttgaggtgccaaatgatcttgtgatttataataatcttc |
213 |
Q |
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| T |
28820279 |
catatagaaagtttttttgcatagtgtcatatattataaactattgagtttattgaaatccttgaggtgccaaatgatcttgtgattcataataatcttc |
28820180 |
T |
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| Q |
214 |
tgcgacaaattcattaattttaagttgtgaaacaatactaggcccacatatagaaagttgcacgcataggatcatattgtatataaatattacc |
307 |
Q |
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| T |
28820179 |
tgcaacaaattcataaattttaagttgtgaaacaatactaggcccacatatagaaagttgcatgcataggatcatattgtatataaatattacc |
28820086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 28820085 - 28820045
Alignment:
| Q |
159 |
gagtttattgaaatccttgaggtgccaaatgatcttgtgat |
199 |
Q |
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| T |
28820085 |
gagtttattgaaatccttgaggtggcaaatgatcttgtgat |
28820045 |
T |
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