View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1567-INSERTION-1 (Length: 540)

Name: NF1567-INSERTION-1
Description: NF1567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1567-INSERTION-1
NF1567-INSERTION-1
[»] chr6 (13 HSPs)
chr6 (174-540)||(3076495-3076861)
chr6 (174-439)||(34017983-34018251)
chr6 (186-540)||(24638934-24639287)
chr6 (194-421)||(10303157-10303386)
chr6 (174-399)||(11012328-11012555)
chr6 (188-388)||(18031725-18031924)
chr6 (253-421)||(19153385-19153555)
chr6 (41-89)||(3076943-3076991)
chr6 (190-385)||(31454032-31454229)
chr6 (186-388)||(34520368-34520572)
chr6 (254-380)||(32528959-32529087)
chr6 (329-377)||(11324385-11324433)
chr6 (254-318)||(22732646-22732710)
[»] chr1 (12 HSPs)
chr1 (268-540)||(27099657-27099930)
chr1 (174-540)||(3926566-3926932)
chr1 (288-488)||(5717066-5717268)
chr1 (186-380)||(33134289-33134485)
chr1 (186-380)||(44889059-44889255)
chr1 (254-376)||(51800469-51800593)
chr1 (254-371)||(9484769-9484888)
chr1 (329-377)||(46271930-46271978)
chr1 (186-265)||(34395436-34395515)
chr1 (327-374)||(34703613-34703660)
chr1 (322-359)||(38274214-38274251)
chr1 (327-371)||(31069569-31069613)
[»] chr3 (10 HSPs)
chr3 (175-392)||(19596118-19596338)
chr3 (183-439)||(42105617-42105874)
chr3 (178-385)||(7583049-7583259)
chr3 (254-388)||(43695689-43695825)
chr3 (321-371)||(35503851-35503901)
chr3 (322-359)||(34291890-34291927)
chr3 (329-377)||(14788785-14788833)
chr3 (329-359)||(20017555-20017585)
chr3 (186-292)||(44774515-44774621)
chr3 (329-371)||(44781791-44781833)
[»] chr2 (5 HSPs)
chr2 (237-540)||(9583461-9583750)
chr2 (174-421)||(32151445-32151694)
chr2 (277-380)||(5589520-5589625)
chr2 (322-371)||(38332172-38332221)
chr2 (329-377)||(2167625-2167673)
[»] chr5 (10 HSPs)
chr5 (174-530)||(42457470-42457829)
chr5 (186-447)||(6612222-6612485)
chr5 (181-371)||(14868192-14868383)
chr5 (245-388)||(17971903-17972048)
chr5 (175-307)||(33020451-33020583)
chr5 (321-399)||(4926705-4926783)
chr5 (277-368)||(16861371-16861464)
chr5 (321-371)||(31124187-31124237)
chr5 (322-371)||(7961270-7961319)
chr5 (329-377)||(704648-704696)
[»] chr7 (8 HSPs)
chr7 (240-374)||(10275402-10275538)
chr7 (255-310)||(16298761-16298816)
chr7 (322-374)||(8566898-8566950)
chr7 (258-371)||(37237859-37237974)
chr7 (41-91)||(16298995-16299046)
chr7 (329-376)||(16560010-16560057)
chr7 (329-376)||(16605605-16605652)
chr7 (329-371)||(14315525-14315567)
[»] chr4 (4 HSPs)
chr4 (240-369)||(19233359-19233490)
chr4 (186-388)||(40435051-40435252)
chr4 (329-377)||(52577902-52577950)
chr4 (322-383)||(5634764-5634825)
[»] chr8 (1 HSPs)
chr8 (186-371)||(1590293-1590480)


Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 174 - 540
Target Start/End: Complemental strand, 3076861 - 3076495
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 273  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3076861 aacagctagccatagcccaacattgccaggggactaagccaaaaaccatgataattgagggaaaattgaacaaattttttcctcaaccacgagtaggaca 3076762  T
Q  274 gtaacttaattttatccactagacgcaaaatcgagcattctttacgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccaga 373  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3076761 gtaacttaattttatccactagacgcaaaatcgagcattctctacgagaaaatcattttatttctttccttccatatttcccacacattagcaaaccaga 3076662  T
Q  374 tgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccatagaaagacc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3076661 tgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccatagaaagacc 3076562  T
Q  474 aatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtgattgaca 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3076561 aatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtgattgaca 3076495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 174 - 439
Target Start/End: Original strand, 34017983 - 34018251
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggac- 272  Q
    |||| ||||||||| |||||||||||||||||||||||||   | ||||  ||||||||||| |||||||||||||||| ||||||||||||| ||||      
T  34017983 aacaactagccataacccaacattgctaggggactaagccaccatccatggtaattgagggataattgaacaaatttttccttcaaccacgagaaggatt 34018082  T
Q  273 agtaacttaattttatccactagacgcaaaatcgagcattctttacgag--aaaatcatgttatttctttccttccatatttcccacacattagcaaacc 370  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||| |   |||||| |||||||||||||||||||||||||||||||| |||| ||||    
T  34018083 agtaacttaattttgtccactaaacgcaaaatcgagcaatctttaccattaaaaatcctgttatttctttccttccatatttcccacacagtagcgaacc 34018182  T
Q  371 agatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgat 439  Q
    | |||||| | |||| || ||| | |||||| | |||||||| |||| |||| |||||| |||||||||    
T  34018183 aaatgacgctaaaaaatgcatgacacacccttggaccaccactaccataaccgaattgggtgaaatgat 34018251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 186 - 540
Target Start/End: Complemental strand, 24639287 - 24638934
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    |||||||||||||| |||||||||||||   | |||| |||||||| |||||| ||||||||||| |  |||||||||||| |||| |||| ||||||||    
T  24639287 tagcccaacattgcaaggggactaagccaccagccatcataattgaaggaaaactgaacaaatttctctttcaaccacgagaaggaaagtagcttaattt 24639188  T
Q  286 tatccactaga--cgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttc 381  Q
    | ||||||| |  | || |||||||||||||||||    ||||||| ||||||||||||| || ||||||||||||    |||||||||| ||||| |||    
T  24639187 tgtccactataatcacataatcgagcattctttaccgttgaaaatcctgttatttctttcttttcatatttcccac----tagcaaaccaaatgacattc 24639092  T
Q  382 aaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccatagaaagaccaatccatt 481  Q
    || ||||| || ||||||   |  | ||||| ||||||||| || || || |||||||||||||||  ||| || |   |||||||||| |||| ||||     
T  24639091 aatattgattgccgcacctgaggtctaccactaccaaaaccgaactgatt-aaatgatctgaagcatagaatgggacgaccatagaaaggccaacccatc 24638993  T
Q  482 gaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtgattgaca 540  Q
      || ||| | ||||||||| | |||||||||||||| || |||||||| |||||||||    
T  24638992 agaggatacaattccaaaccaacccaaaaaatgagcaatgtaaaaataaatgattgaca 24638934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 194 - 421
Target Start/End: Original strand, 10303157 - 10303386
Alignment:
Q  194 cattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccact 293  Q
    |||||| || ||||||||||   | |||| |||||||| |  ||| ||||||||||||   |||||||||||| |||| |||||||||||||||||||||    
T  10303157 cattgcgagaggactaagccaccagccatgataattgaagcgaaaatgaacaaattttgctttcaaccacgagaaggaaagtaacttaattttatccact 10303256  T
Q  294 agacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaat 391  Q
    |  ||||  ||||||||||||||||    |||| || || |||||||||| |||||||||||||||||| |||||||||| || || | ||| || || |    
T  10303257 aatcgcattatcgagcattctttaccgttgaaagtcctgctatttctttctttccatatttcccacacaatagcaaaccaaataacctgcaagatagatt 10303356  T
Q  392 gtcgcaccctcgtaccaccaccaccaaaac 421  Q
    |||||||| | |  |||||||| |||||||    
T  10303357 gtcgcaccttagagccaccaccgccaaaac 10303386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 399
Target Start/End: Complemental strand, 11012555 - 11012328
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 273  Q
    |||| |||| |||||||||| ||||| |||||| | ||||   ||||||  ||||||||  | || |||||||||||  |||||||||||||| |||| |    
T  11012555 aacaactagtcatagcccaaaattgcgaggggattcagccaccaaccatggtaattgagatataaatgaacaaatttcatcttcaaccacgagaaggaaa 11012456  T
Q  274 gtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||| ||||| ||||  | || || ||| |||||||||||||    ||||||||||||||||||||| ||||| |||| ||||||| ||||||| ||    
T  11012455 gtaactttattttgtccatcaaacacataattgagcattctttactgttgaaaatcatgttatttctttctttccacattttccacacagtagcaaatca 11012356  T
Q  372 gatgacgttcaaaattgaatgtcgcacc 399  Q
     |||||  | |||||||| | |||||||    
T  11012355 aatgacaattaaaattgattatcgcacc 11012328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 188 - 388
Target Start/End: Original strand, 18031725 - 18031924
Alignment:
Q  188 gcccaacattgctaggggactaagccgaaaaccataataattga--gggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    ||||||||||||||||||||||||||   |||||| ||||||||  | |||  ||     ||||| | ||||||||||||| |||| ||  |||| ||||    
T  18031725 gcccaacattgctaggggactaagccaccaaccatgataattgatagcgaacctt-----aatttctccttcaaccacgagaaggaaagagactttattt 18031819  T
Q  286 tatccactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 383  Q
    | ||||||| | |||| ||| ||||||||||| ||  |||||| |||||||||||||| ||| |||||| ||||||  |||||||||| ||||| |||||    
T  18031820 tgtccactaaatgcaagatcaagcattctttagcgttgaaaattatgttatttctttctttctatattttccacactgtagcaaaccaaatgacattcaa 18031919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 253 - 421
Target Start/End: Original strand, 19153385 - 19153555
Alignment:
Q  253 tcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatat 350  Q
    |||||||||||||  |||| |||||||| ||||| ||||| | ||||||| ||||||| |||||||    ||||||| ||||||||||||| ||| | ||    
T  19153385 tcttcaaccacgaaaaggaaagtaactttattttgtccaccaaacgcaaagtcgagcactctttaccgttgaaaatcctgttatttctttctttctaaat 19153484  T
Q  351 ttcccacacattagcaaaccagatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaac 421  Q
    |||||||||  |||||||||| || ||  | |||||||| || ||||||   || || |||||||||||||    
T  19153485 ttcccacaccatagcaaaccaaattacagttaaaattgattgccgcacctgggttcccccaccaccaaaac 19153555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 3076991 - 3076943
Alignment:
Q  41 aagaggctaaaatgaaatatatattacgacatcaaagtgtccttcctag 89  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3076991 aagaggttaaaatggaatatatattacgacatcaaagtgtccttcctag 3076943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 385
Target Start/End: Original strand, 31454032 - 31454229
Alignment:
Q  190 ccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatc 289  Q
    ||||||| || |||||||||||||   |||||| |||||| |  || ||  |||||||||| | ||| ||||||||  |||| ||  |||| | ||| |     
T  31454032 ccaacatagcgaggggactaagccaccaaccatgataattaaaagagaaaagaacaaatttctcctttaaccacgaaaaggaaagagactttactttgtt 31454131  T
Q  290 cactagacgcaaaatcgagcattcttta-cga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaa 385  Q
    ||||| ||||| ||||||||| |||||| | | ||||||| ||||||||||||| |||||||||||||| ||  |||||| ||| |||||||| ||||    
T  31454132 cactatacgcataatcgagcaatctttatctatgaaaatcctgttatttctttctttccatatttcccaaactgtagcaagccaaatgacgtttaaaa 31454229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 186 - 388
Target Start/End: Original strand, 34520368 - 34520572
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    |||||||||||||| || ||||||||||   ||||||  |||||||| || || |||| |||||| |  |||||||||||| | || |||  ||| ||||    
T  34520368 tagcccaacattgcgagaggactaagccaccaaccatggtaattgagagataactgaataaatttctctttcaaccacgagaaagaaagtgcctttattt 34520467  T
Q  286 tatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 383  Q
    | ||||| |  |||| ||||||||||||||||     ||||||  ||||||||||||| ||  |||||||||||    |||||||||| |||||||| ||    
T  34520468 tgtccacaatccgcataatcgagcattctttaactttgaaaatgctgttatttctttctttttatatttcccacgtggtagcaaaccaaatgacgtttaa 34520567  T
Q  384 aattg 388  Q
    |||||    
T  34520568 aattg 34520572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 380
Target Start/End: Original strand, 32528959 - 32529087
Alignment:
Q  254 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatt 351  Q
    ||||||||||||  |||| ||  |||| ||||| |||| ||  |||| ||||||||| ||||||  |  |||||| |||||||||||||| |||||||||    
T  32528959 cttcaaccacgaaaaggaaagagactttattttgtccattatgcgcataatcgagcaatctttatccttgaaaattatgttatttctttctttccatatt 32529058  T
Q  352 tcccacacattagcaaaccagatgacgtt 380  Q
    ||| | ||  ||| |||||| ||||||||    
T  32529059 tcctaaactatagaaaaccaaatgacgtt 32529087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 11324433 - 11324385
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||||||||||||||| |||| ||||||  |||||||||| |||||    
T  11324433 tgttatttctttccttccaaattttccacaccgtagcaaaccaaatgac 11324385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 22732646 - 22732710
Alignment:
Q  254 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac 318  Q
    ||||||||||||| |||| ||| |||||| |||||||||||  ||||  ||| ||||||||||||    
T  22732646 cttcaaccacgagaaggaaagtgacttaactttatccactaaccgcattatccagcattctttac 22732710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 268 - 540
Target Start/End: Original strand, 27099657 - 27099930
Alignment:
Q  268 aggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagc 365  Q
    ||||| |||||| |||||| |||||||  |||||||||||||| ||||||  |  ||||||| ||||||||||||| |||||||||| ||||||| ||||    
T  27099657 aggacggtaactaaattttgtccactaatcgcaaaatcgagcaatctttagcattgaaaatcttgttatttctttctttccatattttccacacagtagc 27099756  T
Q  366 aaaccagatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccata 465  Q
    |||||| |||| | |||||| ||||||||||||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  27099757 aaaccaaatgatgctcaaaaatgaatgtcgcacccttggaccaccaccatcaaaaccaaattggttgaaatgacctgaagcaacgaacggtagaaccata 27099856  T
Q  466 gaaagaccaatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtgattgaca 540  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||||||||||||    
T  27099857 gaaagacaaatccattgaagaatgtagttccaaaccg-accaaaaaacgagcaatgaagaaataagtgattgaca 27099930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 174 - 540
Target Start/End: Original strand, 3926566 - 3926932
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataatt-gagggaaaattgaacaaattttttcttcaaccacgagtaggac 272  Q
    ||||| || |||||||||||||||||||||||||||||||   |||||| |||||| ||| |||||||||| |   |||| ||||||||||||| ||||     
T  3926566 aacagttaaccatagcccaacattgctaggggactaagccaccaaccatgataatttgagagaaaattgaaaa---ttttccttcaaccacgagaaggaa 3926662  T
Q  273 agtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaacc 370  Q
    |||| ||||||||| ||||||  ||||||||||||||| ||||||| |  ||||||  ||||||||||||| ||||| ||||||||||||||| ||||||    
T  3926663 agtagcttaattttgtccactcaacgcaaaatcgagcactctttaccattgaaaattctgttatttctttctttccaaatttcccacacattaacaaacc 3926762  T
Q  371 agatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccatagaaag 470  Q
    | |||||| |||| |  |||||||||| ||| |  ||||||||||||||||| ||||| |||||||||||||  | | ||||||||| ||| ||| ||||    
T  3926763 aaatgacgctcaacaaagaatgtcgcatccttggtccaccaccaccaaaaccgaattgattgaaatgatctgttgtaccgaacggtaaatctataaaaag 3926862  T
Q  471 accaatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtgattgaca 540  Q
    |||||||||||||||||  || ||||| ||||| |||||||| || || |||| ||||||||||||||||    
T  3926863 accaatccattgaagaacgtaattccagaccgacccaaaaaacgaacaatgaagaaataagtgattgaca 3926932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 288 - 488
Target Start/End: Complemental strand, 5717268 - 5717066
Alignment:
Q  288 tccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaa 385  Q
    |||||||  |||||||||||||| ||||||| |  ||||||||| ||||||||||| |||||||||| ||||||  |||| || || |||||  ||||||    
T  5717268 tccactaatcgcaaaatcgagcactctttaccattgaaaatcatattatttctttctttccatattttccacaccgtagcgaaacaaatgacactcaaaa 5717169  T
Q  386 ttgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggtagatccatagaaagaccaatccattgaag 485  Q
      ||||| | |||||| |  || || || |||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||    
T  5717168 gagaatggcacaccctaggtcctccgcctccaaaagcgaattggttgaaatgatctgaagcaacgaacggtagaaccaaagaaagaccaattcattgaag 5717069  T
Q  486 aat 488  Q
    |||    
T  5717068 aat 5717066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 380
Target Start/End: Complemental strand, 33134485 - 33134289
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    ||||||||||| || |||||||||||||   ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  33134485 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 33134386  T
Q  286 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 380  Q
    | |||||||  |||| |||||||||||||||   |  ||||||  | ||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  33134385 tgtccactattcgcataatcgagcattctttgaccttgaaaattctattatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 33134289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 186 - 380
Target Start/End: Original strand, 44889059 - 44889255
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    ||||||||||| || |||||||||||||   ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  44889059 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaatgagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 44889158  T
Q  286 tatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgtt 380  Q
    | |||| ||  |||| |||||||||||||||   |  ||||||  ||||||||||||| |||||||||||||| ||| |||||||||| ||| ||||    
T  44889159 tgtccattattcgcataatcgagcattctttgaccttgaaaattctgttatttctttctttccatatttcccaaacagtagcaaaccaaatggcgtt 44889255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 254 - 376
Target Start/End: Complemental strand, 51800593 - 51800469
Alignment:
Q  254 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 351  Q
    ||||||||||   ||||| || ||||||||||| |||||||   |||| |||||||| ||||||  |  ||||||| ||||||||||||| |||||||||    
T  51800593 cttcaaccacctataggaaagcaacttaattttgtccactaacagcaatatcgagcactctttatcattgaaaatcctgttatttctttctttccatatt 51800494  T
Q  352 tcccacacattagcaaaccagatga 376  Q
    ||||||||  |||||||||| ||||    
T  51800493 tcccacactatagcaaaccaaatga 51800469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 9484888 - 9484769
Alignment:
Q  254 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 351  Q
    |||||||||| || |||| | | ||||||| ||||| ||||   |||| ||||| |||||||||| |  ||| ||| ||||||||||||| || || |||    
T  9484888 cttcaaccacaagaaggaaattgacttaatcttatctactatttgcaatatcgaacattctttaccattgaatatcttgttatttctttcttttcaaatt 9484789  T
Q  352 tcccacacattagcaaacca 371  Q
    ||||||||| ||||||||||    
T  9484788 tcccacacactagcaaacca 9484769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 46271978 - 46271930
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||||    
T  46271978 tgttatttctttctttccagatttcccacacagtagcaaaccaaatgac 46271930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 265
Target Start/End: Original strand, 34395436 - 34395515
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacga 265  Q
    |||||||||||||  |||||||||| ||   |||||| ||||||||| || || ||||||||||| | ||||||||||||    
T  34395436 tagcccaacattgtgaggggactaatccaccaaccatgataattgagagagaactgaacaaatttctccttcaaccacga 34395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 34703613 - 34703660
Alignment:
Q  327 catgttatttctttccttccatatttcccacacattagcaaaccagat 374  Q
    ||||||||||||||| |||||||||||||| ||| ||||| |||||||    
T  34703613 catgttatttctttctttccatatttcccagacagtagcataccagat 34703660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 359
Target Start/End: Original strand, 38274214 - 38274251
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacac 359  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  38274214 aaaatcctgttatttctttccttccaaatttcccacac 38274251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 31069613 - 31069569
Alignment:
Q  327 catgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    |||||||| |||||| ||||| |||||||||||| ||||||||||    
T  31069613 catgttatatctttctttccaaatttcccacacaatagcaaacca 31069569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 175 - 392
Target Start/End: Complemental strand, 19596338 - 19596118
Alignment:
Q  175 acagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacag 274  Q
    |||||||||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||| |||  ||||||||||||  ||    
T  19596338 acagctagccatagtccaacattgctaggggactaagccaccaaccatgataattgagggaaaattgaacaaatttttccttacaccacgagtaggttag 19596239  T
Q  275 taacttaattttatccactagacgc-aaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    |||||||||||||||||||||| || ||||||||||| ||||||     ||||||| ||||||||||||||| |||||||||||| | | ||||||||||    
T  19596238 taacttaattttatccactagatgcaaaaatcgagcaatctttattgttgaaaatcctgttatttctttcctcccatatttcccaaagagtagcaaacca 19596139  T
Q  372 gatgacgttcaaaattgaatg 392  Q
    |||||||||||||||||||||    
T  19596138 gatgacgttcaaaattgaatg 19596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 183 - 439
Target Start/End: Complemental strand, 42105874 - 42105617
Alignment:
Q  183 ccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaa 282  Q
    ||||| ||||||| ||||| |||| ||||||   | |||| ||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||    
T  42105874 ccataacccaacactgctaagggattaagccaccatccatgataattgagggaaaattgaacaatttttttcttcaaccacgagaaagaaagtaacttaa 42105775  T
Q  283 ttttatccactagacgcaaaatcgagcattctttacga-gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttc 381  Q
    |||| |||| || ||||| ||| | ||| ||||||| |  || ||||||||||||||||| || || ||||| |||||  |||||||||| |||||| ||    
T  42105774 ttttgtccattaaacgcataattgggcactctttaccattaagatcatgttatttctttcttttcaaatttctcacacggtagcaaaccatatgacgctc 42105675  T
Q  382 aaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgat 439  Q
    ||||  ||| |||||||||| |  || ||||||||| |||| ||||| ||||| ||||    
T  42105674 aaaaaagaaagtcgcacccttgggcctccaccaccataaccgaattgattgaagtgat 42105617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 7583259 - 7583049
Alignment:
Q  178 gctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaa 277  Q
    |||||||||| |||| |||||| || ||| ||||||   ||||||  |||||||| || || |||||||||||  |||||||||| ||| |||| |||||    
T  7583259 gctagccataacccagcattgcgagaggattaagccaccaaccatggtaattgagagataaatgaacaaatttcatcttcaaccaggagaaggaaagtaa 7583160  T
Q  278 cttaattttatccactagacgcaaaatcgagcatt-ctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 374  Q
    ||| ||||| ||||| | ||||||||||||||||| ||||||    ||||||||| ||||||||||| ||||| | |||||||||| |||||||||| ||    
T  7583159 ctttattttgtccaccaaacgcaaaatcgagcatttctttacatttgaaaatcattttatttctttctttccacaattcccacacaatagcaaaccaaat 7583060  T
Q  375 gacgttcaaaa 385  Q
    ||| |||||||    
T  7583059 gacattcaaaa 7583049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 388
Target Start/End: Complemental strand, 43695825 - 43695689
Alignment:
Q  254 cttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatt 351  Q
    ||||||||||||| |||| ||  |||| ||||| ||||||| |||| |||||||||||||||||  |  |||||| ||| ||||||||||  ||||||||    
T  43695825 cttcaaccacgagaaggaaagagactttattttgtccactaaacgcgaaatcgagcattctttagtattgaaaattatgctatttctttctctccatatt 43695726  T
Q  352 tcccacacattagcaaaccagatgacgttcaaaattg 388  Q
    ||  ||||  |||||||||| |||||| |||||||||    
T  43695725 tcatacaccgtagcaaaccaaatgacgatcaaaattg 43695689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 35503901 - 35503851
Alignment:
Q  321 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||    
T  35503901 gaaaatcctgttatttctttctttccatatttcccaaacagtagcaaacca 35503851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 34291927 - 34291890
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacac 359  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34291927 aaaatcatgttatttctttccttccaaatttcccacac 34291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 14788833 - 14788785
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  14788833 tgttatttctttccttccagatttcccacaccctagcaaaccaaatgac 14788785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 359
Target Start/End: Original strand, 20017555 - 20017585
Alignment:
Q  329 tgttatttctttccttccatatttcccacac 359  Q
    |||||||||||||||||||||||||||||||    
T  20017555 tgttatttctttccttccatatttcccacac 20017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 292
Target Start/End: Original strand, 44774515 - 44774621
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    |||||||||||||| |||||||||||||   |||||| |||||||||||| |  | ||||  ||| | ||||||||||||| | || ||| |||| ||||    
T  44774515 tagcccaacattgcgaggggactaagccaccaaccatgataattgagggagatctaaacatttttctccttcaaccacgagaaagaaagtgactttattt 44774614  T
Q  286 tatccac 292  Q
    | |||||    
T  44774615 tgtccac 44774621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 44781791 - 44781833
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||    
T  44781791 tgttatttctttctttccaaatttcccacacagtagcaaacca 44781833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 237 - 540
Target Start/End: Original strand, 9583461 - 9583750
Alignment:
Q  237 aattgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttat 334  Q
    |||||||||||||||| ||||||||| ||| |||| || | ||||||||| |||||||  |||||||||||||| ||||||| |  ||||||| ||||||    
T  9583461 aattgaacaaatttttccttcaaccaagagaaggaaaggagcttaattttgtccactaatcgcaaaatcgagcaatctttaccattgaaaatcctgttat 9583560  T
Q  335 ttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaa 434  Q
    ||||||| ||  |||||||||||||| |||||||||| |||||| | |||| ||||||||||||                |||||||  ||||| |||||    
T  9583561 ttctttctttttatatttcccacacagtagcaaaccaaatgacgctaaaaaatgaatgtcgcac----------------ccaaaactgaattgtttgaa 9583644  T
Q  435 atgatctgaagcaacgaacggtagatccatagaaagaccaatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataagtga 534  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| | || || |||| ||||||||||    
T  9583645 atgatctcaagcaacgaacggtagaaccatagaaagaccaatccattgaagaatgtagttccaaaccgacacaaaagacgaccaatgaagaaataagtga 9583744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 174 - 421
Target Start/End: Complemental strand, 32151694 - 32151445
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 273  Q
    |||||||||||||||||||| ||||| |||||| | || |   ||| ||  |||||||  || || |||||||||||  |||||||||| ||| |||| |    
T  32151694 aacagctagccatagcccaaaattgcgaggggattcagtcaccaactatggtaattgaaagataaatgaacaaatttcatcttcaaccaagagaaggaaa 32151595  T
Q  274 gtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||| ||| ||||| ||||| | || ||||||||||||||||||||    ||||||| ||||||||||||| ||||| |||||||||||| || ||||| |    
T  32151594 gtagctttattttgtccaccaaacacaaaatcgagcattctttactgttgaaaatcttgttatttctttctttccacatttcccacacagtaccaaacga 32151495  T
Q  372 gatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaac 421  Q
     |||||  | |||||||| ||| |||||   || || |||||||||||||    
T  32151494 aatgacagttaaaattgattgttgcacctgagttcccccaccaccaaaac 32151445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 380
Target Start/End: Complemental strand, 5589625 - 5589520
Alignment:
Q  277 acttaattttatccactagacgcaaaatcgagcattcttta--cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 374  Q
    |||| ||||| |||||||  |||| |||||| |||||||||  |  ||||||  ||||||||||||| |||||| ||||||| ||| |||||||||| ||    
T  5589625 acttcattttgtccactattcgcataatcgaacattctttaaccttgaaaattttgttatttctttctttccatctttcccaaacagtagcaaaccaaat 5589526  T
Q  375 gacgtt 380  Q
    ||||||    
T  5589525 gacgtt 5589520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 38332172 - 38332221
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||||||| |||||||| ||||| |||| ||||||| ||||||||||    
T  38332172 aaaatcatgttgtttctttctttccaaattttccacacagtagcaaacca 38332221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 2167625 - 2167673
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||| ||||| |||||||||||||| |||  |||||||||||||||    
T  2167625 tgttattcctttctttccatatttcccaaacagcagcaaaccagatgac 2167673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 174 - 530
Target Start/End: Complemental strand, 42457829 - 42457470
Alignment:
Q  174 aacagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggaca 273  Q
    ||||| || ||||| ||||||| ||| | |||||||||||   | ||||  |||||||||||||||||||||||||||| ||||||||||||| | || |    
T  42457829 aacagttaaccataacccaacactgccaagggactaagccaccatccatggtaattgagggaaaattgaacaaatttttccttcaaccacgagaaagaga 42457730  T
Q  274 gtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
     |||||||||||| ||||||| ||||| ||| ||||| ||||||| |  ||| ||| | || ||||||| |||||| |||| ||||||| ||||||||||    
T  42457729 ataacttaattttgtccactaaacgcataattgagcactctttaccattgaagatcctattgtttcttttcttccaaattttccacacagtagcaaacca 42457630  T
Q  372 gatgacgttcaaaattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagcaacgaacggt-agatccatagaaag 470  Q
     |||||| || |||  ||| |  ||||||| | ||| |||||||||||||| ||||| ||||| |||| ||||||| |   |||| | | | ||||||||    
T  42457629 tatgacgctcgaaaaagaaagctgcacccttggacctccaccaccaaaaccgaattgattgaagtgatttgaagcatcactcggtaataccaatagaaag 42457530  T
Q  471 accaatccattgaagaatatagttccaaaccgaaccaaaaaatgagcagtgaaaaaataa 530  Q
    |||||||||||||||||| | |||||||||||| |||||||| ||||| |||||||||||    
T  42457529 accaatccattgaagaatgttgttccaaaccgacccaaaaaacgagcaatgaaaaaataa 42457470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 186 - 447
Target Start/End: Complemental strand, 6612485 - 6612222
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    |||||||||||||| |||||||||||||   | ||||  ||||||| |||||| ||||||||||| | ||||||||||||| |||| | |||||||||||    
T  6612485 tagcccaacattgcgaggggactaagccaccatccatggtaattgaaggaaaactgaacaaatttctccttcaaccacgagaaggaaaataacttaattt 6612386  T
Q  286 tatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 383  Q
    |  ||||||  |||| |||||||||||||||||    ||||||| ||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||    
T  6612385 tgcccactaatcgcataatcgagcattctttaccgttgaaaatcctgttatttctttctttccatatttctcacacagtagcaaaccaaatgacgttcaa 6612286  T
Q  384 aattgaatgtcgcaccctcgtaccaccaccaccaaaaccaaattggttgaaatgatctgaagca 447  Q
     ||||| |||||||||   |  |   |||||||||||||||| || || |||||||||||||||    
T  6612285 tattgattgtcgcacctgaggtctgtcaccaccaaaaccaaactgattaaaatgatctgaagca 6612222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 371
Target Start/End: Original strand, 14868192 - 14868383
Alignment:
Q  181 agccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaactt 280  Q
    ||||||||||||||| ||| |||||||||||||   | |||| |||||||| |||||| ||||||||||||  |||||||||| || |||| ||||| ||    
T  14868192 agccatagcccaacaatgcaaggggactaagccaccagccatgataattgaaggaaaaatgaacaaattttgccttcaaccacaagaaggaaagtaattt 14868291  T
Q  281 aattttatccactagacgcaaaatcgagcattcttta-cgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    |||||| |||||||   ||| ||| ||||||| |||| ||  |||||  ||||||||||||| || ||||||||| ||||  ||||||||||    
T  14868292 aattttgtccactaattgcataattgagcattatttatcgttaaaattctgttatttctttcttttcatatttcctacacgatagcaaacca 14868383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 245 - 388
Target Start/End: Original strand, 17971903 - 17972048
Alignment:
Q  245 aaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttcc 342  Q
    |||||| || ||||||||||| || || ||| |||| ||||| ||||| |  |||| |||||||| |||||||  |  | |||| ||||||||||||||     
T  17971903 aaatttctttttcaaccacgaataagaaagtgactttattttgtccacaatccgcataatcgagctttctttatcattggaaattatgttatttctttct 17972002  T
Q  343 ttccatatttcccacacattagcaaaccagatgacgttcaaaattg 388  Q
    |||||||||||||||||| |||||||||| |||||||| |||||||    
T  17972003 ttccatatttcccacacagtagcaaaccaaatgacgtttaaaattg 17972048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 33020583 - 33020451
Alignment:
Q  175 acagctagccatagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacag 274  Q
    |||||||||  |||| || |||||| |||||| ||||||   || ||| ||||||||| || || ||||||| |||  |||||||||||||| |||| ||    
T  33020583 acagctagcagtagctcagcattgcgaggggattaagccactaatcatgataattgagagataaatgaacaagtttcatcttcaaccacgagaaggaaag 33020484  T
Q  275 taacttaattttatccactagacgcaaaatcga 307  Q
    |||||||||||||||||| | ||||||||||||    
T  33020483 taacttaattttatccaccaaacgcaaaatcga 33020451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 399
Target Start/End: Complemental strand, 4926783 - 4926705
Alignment:
Q  321 gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaaaattgaatgtcgcacc 399  Q
    ||||||||||||||||||||| ||||| ||||| |||||| |||||||||| |||||||| |||||||| || ||||||    
T  4926783 gaaaatcatgttatttctttctttccaaatttctcacacagtagcaaaccaaatgacgtttaaaattgagtgccgcacc 4926705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 16861371 - 16861464
Alignment:
Q  277 acttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaa 368  Q
    ||||||| ||||||||||  ||||| ||||| |||| ||||  |  ||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  16861371 acttaatcttatccactaaccgcaatatcgaacattgtttatcattgaagatcatgttatttctttctttccatatttcccacacactagcaaa 16861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 31124237 - 31124187
Alignment:
Q  321 gaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||| ||||||||||||| ||||| |||||||||||| ||||||||||    
T  31124237 gaaaatcctgttatttctttctttccagatttcccacacagtagcaaacca 31124187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 7961270 - 7961319
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||| ||||| ||||||||||||||||||||||||| | | ||||||||    
T  7961270 aaaattatgttgtttctttccttccatatttcccacatagtcgcaaacca 7961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 704648 - 704696
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||||||||||||||||||||| || ||  |||||||||| |||||    
T  704648 tgttatttctttccttccatatttctcaaactgtagcaaaccaaatgac 704696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 10275538 - 10275402
Alignment:
Q  240 tgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttc 337  Q
    |||||||||||  | |||||||||||| |||| |||| |||||||||||||||||  ||||  ||||||||||||||||    |||| ||||||||||||    
T  10275538 tgaacaaatttcgtattcaaccacgagaaggaaagtagcttaattttatccactaatcgcattatcgagcattctttactgttgaaagtcatgttatttc 10275439  T
Q  338 tttccttccatatttcccacacattagcaaaccagat 374  Q
    |||| ||||||||||| || ||| ||| |||||||||    
T  10275438 tttctttccatatttctcaaacaatagtaaaccagat 10275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 16298816 - 16298761
Alignment:
Q  255 ttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagca 310  Q
    ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||    
T  16298816 ttcaaccacgaataggacagtaacttaattttgtccactagacacaagatcgagca 16298761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 8566898 - 8566950
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagat 374  Q
    ||||||||| |||||||||||||||| |||||||| ||  |||||||||||||    
T  8566898 aaaatcatgctatttctttccttccaaatttcccaaactgtagcaaaccagat 8566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 37237859 - 37237974
Alignment:
Q  258 aaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttccc 355  Q
    |||||| ||||||| || ||||||||||| |||||||   ||   |||||||| ||||||| |  ||| ||  ||||||||||||| || ||||||||||    
T  37237859 aaccaccagtaggaaagcaacttaattttgtccactaacagcgttatcgagcactctttaccattgaagatactgttatttctttctttacatatttccc 37237958  T
Q  356 acacattagcaaacca 371  Q
    ||||| ||||||||||    
T  37237959 acacagtagcaaacca 37237974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 16299046 - 16298995
Alignment:
Q  41 aagaggctaaaatgaaatatatattacga-catcaaagtgtccttcctagca 91  Q
    |||||||||||||||||||||||||||||  || |||||||| |||||||||    
T  16299046 aagaggctaaaatgaaatatatattacgataataaaagtgtctttcctagca 16298995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Complemental strand, 16560057 - 16560010
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatga 376  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16560057 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16560010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 16605605 - 16605652
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatga 376  Q
    ||||||||||||| |||||||||||||||||  |||||||||| ||||    
T  16605605 tgttatttctttctttccatatttcccacaccgtagcaaaccaaatga 16605652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 14315525 - 14315567
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    ||||||||||||||||||| ||||||||| || ||||||||||    
T  14315525 tgttatttctttccttccaaatttcccacgcagtagcaaacca 14315567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 19233490 - 19233359
Alignment:
Q  240 tgaacaaattttttcttcaaccacgagtaggacagtaacttaattttatccactagacgcaaaatcgagcattctttac--gagaaaatcatgttatttc 337  Q
    ||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||  | ||  ||||||||||||||||    |||| |||| ||||||     
T  19233490 tgaacaaattttaccttcaaccacgagaaggaaagtaacttaattttatccactaatcacattatcgagcattctttaccgttgaaagtcatattattta 19233391  T
Q  338 tttccttccatatttcccacacattagcaaac 369  Q
    |||| ||||||||||  |||||| ||||||||    
T  19233390 tttctttccatatttttcacacagtagcaaac 19233359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 388
Target Start/End: Complemental strand, 40435252 - 40435051
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    |||||||||||||| || |||||||| |   ||||||  |||||||| ||||  ||||   |||| | |||||||||||| || || ||| |||| ||||    
T  40435252 tagcccaacattgcgagaggactaagtcaccaaccatggtaattgagagaaatctgaa---atttctccttcaaccacgaataagaaagtgactttattt 40435156  T
Q  286 tatccactagacgcaaaatcgagcattctttacga--gaaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 383  Q
    | ||||| |   ||| |||||||| |||||||  |  |||||| |||||||||||||| ||||| |||||||||| | |||||||||| | |||||| ||    
T  40435155 tgtccacaatgtgcataatcgagctttctttatcattgaaaattatgttatttctttctttccagatttcccacataatagcaaaccaaaagacgtttaa 40435056  T
Q  384 aattg 388  Q
    |||||    
T  40435055 aattg 40435051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 52577950 - 52577902
Alignment:
Q  329 tgttatttctttccttccatatttcccacacattagcaaaccagatgac 377  Q
    ||||||||||||||||||| |||||||||||  |||||||||| |||||    
T  52577950 tgttatttctttccttccagatttcccacaccgtagcaaaccaaatgac 52577902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 5634825 - 5634764
Alignment:
Q  322 aaaatcatgttatttctttccttccatatttcccacacattagcaaaccagatgacgttcaa 383  Q
    |||||| ||||||||||||| ||||| | |||||||||| | |||||||| ||||| |||||    
T  5634825 aaaatcctgttatttctttctttccacaattcccacacagttgcaaaccaaatgacattcaa 5634764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 371
Target Start/End: Complemental strand, 1590480 - 1590293
Alignment:
Q  186 tagcccaacattgctaggggactaagccgaaaaccataataattgagggaaaattgaacaaattttttcttcaaccacgagtaggacagtaacttaattt 285  Q
    ||||||||||| || |||||||||||||   ||||||  |||||||  || ||||||| ||| || | ||||||||||||  |||| ||  |||| ||||    
T  1590480 tagcccaacatagcgaggggactaagccaccaaccatggtaattgaaagagaattgaaaaaaattctccttcaaccacgaaaaggaaagagactttattt 1590381  T
Q  286 tatccactagacgcaaaatcgagcattcttt--acgagaaaatcatgttatttctttccttccatatttcccacacattagcaaacca 371  Q
    | |||||||  |||| |||||||||||||||   |  |||| |  ||||||||||||  |||||||||||||| ||| ||||||||||    
T  1590380 tgtccactattcgcataatcgagcattctttgatcttgaaacttctgttatttctttttttccatatttcccaaacagtagcaaacca 1590293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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