View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1567-INSERTION-6 (Length: 745)

Name: NF1567-INSERTION-6
Description: NF1567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1567-INSERTION-6
NF1567-INSERTION-6
[»] chr3 (11 HSPs)
chr3 (7-637)||(21655726-21656359)
chr3 (709-745)||(32651049-32651085)
chr3 (709-745)||(33151865-33151901)
chr3 (709-745)||(19268397-19268433)
chr3 (709-745)||(19664417-19664453)
chr3 (709-745)||(20760300-20760336)
chr3 (709-745)||(31122538-31122574)
chr3 (709-745)||(50287442-50287478)
chr3 (709-745)||(51562038-51562074)
chr3 (709-745)||(55164344-55164380)
chr3 (714-745)||(35346694-35346725)
[»] chr2 (13 HSPs)
chr2 (93-238)||(31171809-31171954)
chr2 (709-745)||(19180298-19180334)
chr2 (289-363)||(15828542-15828616)
chr2 (709-745)||(2455886-2455922)
chr2 (709-745)||(3430853-3430889)
chr2 (709-745)||(7297461-7297497)
chr2 (709-745)||(7378839-7378875)
chr2 (709-745)||(9276450-9276486)
chr2 (709-745)||(9331641-9331677)
chr2 (709-745)||(16246422-16246458)
chr2 (709-745)||(29737624-29737660)
chr2 (709-745)||(38750924-38750960)
chr2 (709-744)||(12759979-12760014)
[»] scaffold0006 (1 HSPs)
scaffold0006 (71-225)||(148542-148695)
[»] chr4 (20 HSPs)
chr4 (18-163)||(39323547-39323693)
chr4 (709-745)||(25730116-25730152)
chr4 (709-745)||(44490086-44490122)
chr4 (710-745)||(37381723-37381758)
chr4 (710-743)||(50542585-50542618)
chr4 (709-745)||(12196354-12196390)
chr4 (709-745)||(17847324-17847360)
chr4 (709-745)||(17847353-17847389)
chr4 (709-745)||(20534334-20534370)
chr4 (709-745)||(22298395-22298431)
chr4 (709-745)||(31208624-31208660)
chr4 (709-745)||(31617664-31617700)
chr4 (709-745)||(32118590-32118626)
chr4 (709-745)||(48149375-48149411)
chr4 (710-745)||(33808009-33808044)
chr4 (711-745)||(8882242-8882276)
chr4 (712-745)||(11795383-11795416)
chr4 (383-432)||(13212833-13212882)
chr4 (290-363)||(13212957-13213030)
chr4 (444-493)||(17766417-17766466)
[»] chr1 (18 HSPs)
chr1 (71-225)||(13658781-13658934)
chr1 (709-745)||(12964522-12964558)
chr1 (709-745)||(25800519-25800555)
chr1 (709-745)||(8141715-8141751)
chr1 (709-745)||(17989996-17990032)
chr1 (709-745)||(23228423-23228459)
chr1 (709-745)||(23767643-23767679)
chr1 (709-745)||(24204699-24204735)
chr1 (709-745)||(38473855-38473891)
chr1 (709-745)||(48802552-48802588)
chr1 (709-745)||(49094940-49094976)
chr1 (709-745)||(50099096-50099132)
chr1 (713-745)||(50533263-50533295)
chr1 (709-745)||(52067883-52067919)
chr1 (709-744)||(7608996-7609031)
chr1 (709-745)||(25988500-25988537)
chr1 (709-742)||(40721256-40721289)
chr1 (709-745)||(45350943-45350980)
[»] scaffold1562 (1 HSPs)
scaffold1562 (709-745)||(708-744)
[»] scaffold1158 (1 HSPs)
scaffold1158 (709-745)||(1849-1885)
[»] chr8 (4 HSPs)
chr8 (709-745)||(1293362-1293398)
chr8 (709-745)||(4649026-4649062)
chr8 (709-745)||(9884732-9884768)
chr8 (709-745)||(38633933-38633969)
[»] chr5 (13 HSPs)
chr5 (709-745)||(6251869-6251905)
chr5 (710-745)||(33760699-33760734)
chr5 (709-745)||(567737-567773)
chr5 (709-745)||(3352230-3352266)
chr5 (709-745)||(6600365-6600401)
chr5 (709-745)||(11692376-11692412)
chr5 (709-745)||(17002385-17002421)
chr5 (709-745)||(20079486-20079522)
chr5 (709-745)||(20408409-20408445)
chr5 (709-745)||(26593509-26593545)
chr5 (709-745)||(31710158-31710194)
chr5 (709-745)||(40074826-40074862)
chr5 (709-745)||(41282218-41282254)
[»] scaffold0693 (1 HSPs)
scaffold0693 (709-745)||(5256-5292)
[»] scaffold0031 (1 HSPs)
scaffold0031 (709-745)||(101230-101266)
[»] chr7 (8 HSPs)
chr7 (709-745)||(7335936-7335972)
chr7 (709-745)||(11050490-11050526)
chr7 (709-745)||(18353020-18353056)
chr7 (709-745)||(27364568-27364604)
chr7 (709-745)||(31793848-31793884)
chr7 (709-745)||(47271857-47271893)
chr7 (709-745)||(48628681-48628717)
chr7 (709-744)||(30798598-30798633)
[»] chr6 (5 HSPs)
chr6 (709-745)||(6503594-6503630)
chr6 (709-745)||(6785327-6785363)
chr6 (709-745)||(12613050-12613086)
chr6 (709-745)||(12626512-12626548)
chr6 (709-745)||(17942914-17942950)
[»] scaffold0184 (1 HSPs)
scaffold0184 (709-743)||(12971-13005)
[»] scaffold0078 (1 HSPs)
scaffold0078 (709-743)||(59839-59873)


Alignment Details
Target: chr3 (Bit Score: 552; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 7 - 637
Target Start/End: Original strand, 21655726 - 21656359
Alignment:
Q  7 agtttagactcttgatttaaattatttaaatgaaaactgttatgttccataacacttagttattggtttggttgaacttggcaatcagactacccgtcat 106  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21655726 agtttagactcttgatttaaattatttaaatgaagactgttatgttccataacacttagttattggtttggttgaacttggtaatcagactacccgtcat 21655825  T
Q  107 tttgtgacgtatgctccaaaatgatggtaaatcaaattctagatttttgtgacacttgctccaaaaattagtagaagttataatgagattgattgatgct 206  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21655826 tttgtgacgcatgctccaaaataatggtaaatcaaattctagatttttgtgacacttgctccaaaaattagtagaagttataatgagattgattgatgct 21655925  T
Q  207 taattggttagttttatagacaaacaagataactgaatcatagagaacaactttaatacctctgaaagacttgagcagactctgacaaactagtggacta 306  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  21655926 taatttgttagttttataaacaaacaagataactgaatcatagagaacaactttaatacctctgaaagacttgaacagactctgacaaactagtggacca 21656025  T
Q  307 gttgttttgccaaatcattaattttgccaggttgatcatcattttccacaaacaaaatcttgtaatttactttcattttaattgccttgtgctgcttttt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21656026 gttgttttgccaaatcattaattttgccaggttgatcatcattttccacaaacaaaatcttgtaatttactttcattttaattgccttgtgctgcttttt 21656125  T
Q  407 gtaaatcattttgactgcgaacgataacg---aaagatggagatgagttttagaatgaagaaaatcgaagaaaggaaatgtatttatagacaatccatgt 503  Q
    ||||||||||||||||| |||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21656126 gtaaatcattttgactgggaacgataacgatcaaagatgaagatgagttttagaatgaagaaaatcgaagaaaggaaatgtgtttatagacaatccatgt 21656225  T
Q  504 caataaaacgtgtacattatgtcattctacaaccaaaaatcatctgacctttcaaagacttgtcgatcggacttccgtcgaaattctgaactatttcata 603  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  21656226 caataaaacgtgtacattatgtcattttgcaaccaaaaatcatctgacctttcaaagatttgttgatcggacttccgtcgaaattctgaactatttcata 21656325  T
Q  604 gtatataattgggcaaatgcatctaaaggtcttt 637  Q
     ||||||||||| |||||||||||||||||||||    
T  21656326 atatataattggtcaaatgcatctaaaggtcttt 21656359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 32651085 - 32651049
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  32651085 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 32651049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 33151901 - 33151865
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  33151901 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 33151865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 19268397 - 19268433
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19268397 gtttcaaaagtctcaaacaagtcttttaagtttcaaa 19268433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 19664417 - 19664453
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19664417 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 19664453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 20760336 - 20760300
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20760336 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 20760300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 31122538 - 31122574
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31122538 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 31122574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 50287442 - 50287478
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50287442 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 50287478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 51562038 - 51562074
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  51562038 gtttcaaaagtctcaaacaagtcttttaagtttcaaa 51562074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 55164380 - 55164344
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  55164380 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 55164344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 745
Target Start/End: Complemental strand, 35346725 - 35346694
Alignment:
Q  714 aaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||||||||||||    
T  35346725 aaaagtctcaaacaagtcctttaagtttcaaa 35346694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 93 - 238
Target Start/End: Complemental strand, 31171954 - 31171809
Alignment:
Q  93 agactacccgtcattttgtgacgtatgctccaaaatgatggtaaatcaaattctagatttttgtgacacttgctccaaaaattagtagaagttataatga 192  Q
    |||||| ||||  ||||||||||  ||||||| ||| |||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||| |    
T  31171954 agactagccgtggttttgtgacgcttgctccataatcatggtaaatcaaattctagatttttgtgacgcttgttccaaaaatcagtagaagttttaataa 31171855  T
Q  193 gattgattgatgcttaattggttagttttatagacaaacaagataa 238  Q
     ||| ||||||||||||||| || ||||||||| ||||||||||||    
T  31171854 aattaattgatgcttaattgtttggttttatagccaaacaagataa 31171809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 19180298 - 19180334
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  19180298 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 19180334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 363
Target Start/End: Complemental strand, 15828616 - 15828542
Alignment:
Q  289 tgacaaactagtggactagttgttttgccaaatcattaattttgccaggttgatcatcattttccacaaacaaaa 363  Q
    |||||||  |||||| | |||||||||| ||||| ||||||||| ||  ||||||||| ||||||||||||||||    
T  15828616 tgacaaagcagtggattggttgttttgctaaatcgttaattttgtcaaattgatcatctttttccacaaacaaaa 15828542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 2455886 - 2455922
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  2455886 gtttcaaaagtcgcaaacaagtcctttaagtttcaaa 2455922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 3430889 - 3430853
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3430889 gtttcaaaagtctcaaacaaatcctttaagtttcaaa 3430853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 7297497 - 7297461
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7297497 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 7297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 7378839 - 7378875
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7378839 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 7378875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 9276450 - 9276486
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9276450 gtttcaaaagtctcaagcaagtcctttaagtttcaaa 9276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 9331641 - 9331677
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9331641 gtttcaaaagtctcaagcaagtcctttaagtttcaaa 9331677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 16246458 - 16246422
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  16246458 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 16246422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 29737624 - 29737660
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||||||||| |||||||    
T  29737624 gtttcaaaagtctcaaacaagtcctttaaatttcaaa 29737660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 38750924 - 38750960
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38750924 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 38750960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 744
Target Start/End: Complemental strand, 12760014 - 12759979
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaa 744  Q
    |||||||||||| |||||||||||||||||||||||    
T  12760014 gtttcaaaagtcccaaacaagtcctttaagtttcaa 12759979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 148542 - 148695
Alignment:
Q  71 ggtttggttgaacttggcaatcagactacccgtcattttgtgacgtatgctccaaaatgatggtaaatcaaattctagatttttgtgacacttgctccaa 170  Q
    ||||||||||||| ||  | ||||| || |||| |||||||||||  ||||||||||| |   ||||||||||||||||||||| |||| ||||||||||    
T  148542 ggtttggttgaacatgttattcagattagccgtgattttgtgacgcttgctccaaaatcacattaaatcaaattctagatttttttgacgcttgctccaa 148641  T
Q  171 aaattagtagaagttataatgagattgattgatgcttaattggttagttttatag 225  Q
    ||||||| || |||| |||||| ||| ||||||||||||  ||||||||||||||    
T  148642 aaattagcagtagttctaatga-attaattgatgcttaaacggttagttttatag 148695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 39323547 - 39323693
Alignment:
Q  18 ttgatttaaattattt-aaatgaaaactgttatgttccataacacttagttattggtttggttgaacttggcaatcagactacccgtcattttgtgacgt 116  Q
    |||||||||||||||| ||||||| | ||||| |||  ||||||||||||||| |||||| |||||||||  ||||||| || | || |||||||||||     
T  39323547 ttgatttaaattatttcaaatgaagattgttaggttttataacacttagttataggtttgattgaacttgttaatcagattagctgtgattttgtgacgg 39323646  T
Q  117 atgctccaaaatgatggtaaatcaaattctagatttttgtgacactt 163  Q
     ||||||||||| ||| ||||||||||| ||||||||||| ||||||    
T  39323647 ttgctccaaaatcatgctaaatcaaattgtagatttttgtaacactt 39323693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 25730116 - 25730152
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  25730116 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 25730152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 44490086 - 44490122
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  44490086 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 44490122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 745
Target Start/End: Original strand, 37381723 - 37381758
Alignment:
Q  710 tttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||||||||||||||||    
T  37381723 tttcaaaagtctcaaacaagtcctttaagtttcaaa 37381758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 743
Target Start/End: Complemental strand, 50542618 - 50542585
Alignment:
Q  710 tttcaaaagtctcaaacaagtcctttaagtttca 743  Q
    ||||||||||||||||||||||||||||||||||    
T  50542618 tttcaaaagtctcaaacaagtcctttaagtttca 50542585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 12196354 - 12196390
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12196354 gtttcaaaagtcacaaacaagtcctttaagtttcaaa 12196390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 17847360 - 17847324
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17847360 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 17847324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 17847389 - 17847353
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17847389 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 17847353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 20534370 - 20534334
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||| ||||||||||||||||    
T  20534370 gtttcaaaagtctcaaacaattcctttaagtttcaaa 20534334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 22298395 - 22298431
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  22298395 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 22298431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 31208624 - 31208660
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31208624 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 31208660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 31617700 - 31617664
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||| |||||||||||||||||||||    
T  31617700 gtttcaaaagtctcatacaagtcctttaagtttcaaa 31617664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 32118590 - 32118626
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  32118590 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 32118626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 48149375 - 48149411
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  48149375 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 48149411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 745
Target Start/End: Complemental strand, 33808044 - 33808009
Alignment:
Q  710 tttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||| ||||||||||||||||||||||||    
T  33808044 tttcaaaagtcccaaacaagtcctttaagtttcaaa 33808009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 745
Target Start/End: Complemental strand, 8882276 - 8882242
Alignment:
Q  711 ttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||| ||||||||||||||||||||||||    
T  8882276 ttcaaaagtcccaaacaagtcctttaagtttcaaa 8882242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 745
Target Start/End: Complemental strand, 11795416 - 11795383
Alignment:
Q  712 tcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||| |||||||||    
T  11795416 tcaaaagtctcaaacaagtccttttagtttcaaa 11795383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 432
Target Start/End: Complemental strand, 13212882 - 13212833
Alignment:
Q  383 tttaattgccttgtgctgctttttgtaaatcattttgactgcgaacgata 432  Q
    ||||| |||||||| || |||||||||||| |||||||| ||||||||||    
T  13212882 tttaagtgccttgtactactttttgtaaattattttgaccgcgaacgata 13212833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 13213030 - 13212957
Alignment:
Q  290 gacaaactagtggactagttgttttgccaaatcattaattttgccaggttgatcatcattttccacaaacaaaa 363  Q
    ||||||| | |||| | ||||||||||  |||| ||||||||| ||  ||||||||| ||||||||||||||||    
T  13213030 gacaaaccattggattggttgttttgcggaatcgttaattttgtcaatttgatcatccttttccacaaacaaaa 13212957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 17766466 - 17766417
Alignment:
Q  444 agatgagttttagaatgaagaaaatcgaagaaaggaaatgtatttataga 493  Q
    |||||||||||||||||||||| || |||||||| |||| || |||||||    
T  17766466 agatgagttttagaatgaagaatatggaagaaagaaaatttacttataga 17766417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 71 - 225
Target Start/End: Original strand, 13658781 - 13658934
Alignment:
Q  71 ggtttggttgaacttggcaatcagactacccgtcattttgtgacgtatgctccaaaatgatggtaaatcaaattctagatttttgtgacacttgctccaa 170  Q
    ||||||||||||| ||  | ||||| || |||| |||||||||||  ||||||||||| |   ||||||||||||||||||||| |||| ||||||||||    
T  13658781 ggtttggttgaacatgttattcagattagccgtgattttgtgacgcttgctccaaaatcacattaaatcaaattctagatttttttgacgcttgctccaa 13658880  T
Q  171 aaattagtagaagttataatgagattgattgatgcttaattggttagttttatag 225  Q
    ||||||| || |||| |||||| ||| ||||||||||||  ||||||||||||||    
T  13658881 aaattagcagtagttctaatga-attaattgatgcttaaacggttagttttatag 13658934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 12964522 - 12964558
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  12964522 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 12964558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 25800519 - 25800555
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  25800519 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 25800555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 8141751 - 8141715
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8141751 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 8141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 17990032 - 17989996
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||||||||| |||||||    
T  17990032 gtttcaaaagtctcaaacaagtcctttaaatttcaaa 17989996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 23228459 - 23228423
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  23228459 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 23228423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 23767679 - 23767643
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23767679 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 23767643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 24204735 - 24204699
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  24204735 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 24204699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 38473891 - 38473855
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38473891 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 38473855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 48802588 - 48802552
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  48802588 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 48802552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 49094976 - 49094940
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49094976 gtttcaaaagtctcaaacaagtcttttaagtttcaaa 49094940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 50099096 - 50099132
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50099096 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 50099132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 713 - 745
Target Start/End: Original strand, 50533263 - 50533295
Alignment:
Q  713 caaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||    
T  50533263 caaaagtctcaaacaagtcctttaagtttcaaa 50533295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 52067919 - 52067883
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||| ||||||    
T  52067919 gtttcaaaagtctcaaacaagtcctttaagattcaaa 52067883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 744
Target Start/End: Complemental strand, 7609031 - 7608996
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaa 744  Q
    |||||||||||| |||||||||||||||||||||||    
T  7609031 gtttcaaaagtcccaaacaagtcctttaagtttcaa 7608996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 25988537 - 25988500
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcc-tttaagtttcaaa 745  Q
    |||||||||||||||||||||||| |||||||||||||    
T  25988537 gtttcaaaagtctcaaacaagtccttttaagtttcaaa 25988500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 742
Target Start/End: Original strand, 40721256 - 40721289
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttc 742  Q
    ||||||||||||||||||||||||||| ||||||    
T  40721256 gtttcaaaagtctcaaacaagtccttttagtttc 40721289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 45350980 - 45350943
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcc-tttaagtttcaaa 745  Q
    |||||||||||||||||||||||| |||||||||||||    
T  45350980 gtttcaaaagtctcaaacaagtccttttaagtttcaaa 45350943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 744 - 708
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  744 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 1849 - 1885
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  1849 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 1293362 - 1293398
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  1293362 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 1293398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 4649026 - 4649062
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4649026 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 4649062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 9884732 - 9884768
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  9884732 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 9884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 38633969 - 38633933
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  38633969 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 38633933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 6251869 - 6251905
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||||||||||||||||||    
T  6251869 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 6251905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 745
Target Start/End: Complemental strand, 33760734 - 33760699
Alignment:
Q  710 tttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||||||||||||||||    
T  33760734 tttcaaaagtctcaaacaagtcctttaagtttcaaa 33760699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 567773 - 567737
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||| |||||||||||||||||||    
T  567773 gtttcaaaagtctcaaataagtcctttaagtttcaaa 567737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 3352266 - 3352230
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3352266 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 3352230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 6600401 - 6600365
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6600401 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 6600365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 11692412 - 11692376
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  11692412 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 11692376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 17002421 - 17002385
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17002421 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 17002385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 20079522 - 20079486
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20079522 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 20079486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 20408409 - 20408445
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  20408409 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 20408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 26593545 - 26593509
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26593545 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 26593509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 31710158 - 31710194
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31710158 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 31710194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 40074826 - 40074862
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40074826 gtttcaaaagtctcaaacaagtcgtttaagtttcaaa 40074862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 41282218 - 41282254
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41282218 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 41282254  T

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Target: scaffold0693 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 5292 - 5256
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5292 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 5256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 101266 - 101230
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  101266 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 101230  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 7335936 - 7335972
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7335936 gtttcaaaagtctcaaacaagtcatttaagtttcaaa 7335972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 11050526 - 11050490
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  11050526 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 11050490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 18353020 - 18353056
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18353020 gtttcgaaagtctcaaacaagtcctttaagtttcaaa 18353056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 27364604 - 27364568
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27364604 gtttcaaaagtctcaaacaagtcttttaagtttcaaa 27364568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 31793884 - 31793848
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  31793884 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 31793848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 47271857 - 47271893
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47271857 gtttcaaaagtctcaagcaagtcctttaagtttcaaa 47271893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 48628681 - 48628717
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||||||||||||| ||||||||||||||    
T  48628681 gtttcaaaagtctcaaacaagttctttaagtttcaaa 48628717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 744
Target Start/End: Complemental strand, 30798633 - 30798598
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaa 744  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30798633 gtttcaaaagtctcaaacaagtcttttaagtttcaa 30798598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 6503594 - 6503630
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  6503594 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 6503630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 6785363 - 6785327
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6785363 gtttcaaaagtctcaaacaagtcttttaagtttcaaa 6785327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Complemental strand, 12613086 - 12613050
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12613086 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 12613050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 12626512 - 12626548
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12626512 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 12626548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 709 - 745
Target Start/End: Original strand, 17942914 - 17942950
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttcaaa 745  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17942914 gtttcaaaagtcccaaacaagtcctttaagtttcaaa 17942950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Original strand, 12971 - 13005
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttca 743  Q
    ||||||||||||||||||||||| |||||||||||    
T  12971 gtttcaaaagtctcaaacaagtcttttaagtttca 13005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 743
Target Start/End: Complemental strand, 59873 - 59839
Alignment:
Q  709 gtttcaaaagtctcaaacaagtcctttaagtttca 743  Q
    ||||||||||||||||||||||| |||||||||||    
T  59873 gtttcaaaagtctcaaacaagtcttttaagtttca 59839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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